[Debian-med-packaging] Bug#997834: samtools: binary-any FTBFS

Adrian Bunk bunk at debian.org
Mon Oct 25 17:10:44 BST 2021


Source: samtools
Version: 1.13-3
Severity: serious
Tags: ftbfs

https://buildd.debian.org/status/logs.php?pkg=samtools&ver=1.13-3

...
dh_install
	install -d debian/samtools//usr
	cp --reflink=auto -a debian/tmp/usr/bin debian/samtools//usr/
	install -d debian/samtools//usr/share/man
	cp --reflink=auto -a debian/tmp/usr/share/man/man1 debian/samtools//usr/share/man/
	install -d debian/samtools/usr/share/commonwl/
	cp --reflink=auto -a ./debian/samtools-faidx.cwl ./debian/samtools-index.cwl ./debian/samtools-rmdup.cwl ./debian/samtools-sort.cwl ./debian/samtools-view.cwl debian/samtools/usr/share/commonwl//
	cp --reflink=auto -a ./debian/mans/ace2sam.1 ./debian/mans/samtools.pl.1 ./debian/mans/wgsim.1 debian/samtools/usr/share/man/man1/
	install -d debian/.debhelper/generated/samtools
	install -d debian/.debhelper/generated/samtools-test
# Fix Perl interpreter PATH
for pscript in `grep -Rl '#!/usr/bin/env \+perl' debian/*` ; do \
    sed -i '1s?#!/usr/bin/env \+perl?#!/usr/bin/perl?' ${pscript} ; \
done
# Disable the executable bit on a dataset.
chmod 0644 debian/samtools-test/usr/share/samtools/test/ampliconclip/ac_test.bed
chmod: cannot access 'debian/samtools-test/usr/share/samtools/test/ampliconclip/ac_test.bed': No such file or directory
make[1]: *** [debian/rules:59: override_dh_install] Error 1



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