[Debian-med-packaging] Bug#994474: altree bug fixed but autopkgtest causes Segmentation fault (Was: Bug#994474: please update recommends on openblas)

[Andreas Tille]

On Fri, Sep 17, 2021 at 03:40:33PM +0200, Vincent Danjean wrote:
> > > altree recommends libopenblas-base, which is a transitional dummy package.
> > > Please replace it by libopenblas0.
> > 
> > this is fixed in Git but when rebuilding (with more recent gcc) I get
> 
>   I built the package locally, installed it and executed the
> debian/tests/run-unit-test manually.
>   No errors occurred (with gcc from up-to-date unstable, ie
> gcc=4:10.2.1-1 and gcc-10=10.3.0-10).
> 
>   Did you try with gcc from experimental ?

No,  I was building in unstable chroot and was executing autopkgtest in
the same chroot.  I admit salsa-ci did not reproduced my local problem
here.

Kind regards

       Andreas.
 
> > 
> > autopkgtest [12:08:54]: test run-unit-test: [-----------------------
> > Analyzing file number 1
> > read done
> > Starting tree analysis
> > Starting permutations
> > /tmp/autopkgtest.BGTBdL/tree/debian/tests/run-unit-test: line 26:   150 Segmentation fault      altree -i test.res.log -j nb_cas_control.txt -a -t SNP -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso -q qualitative
> > autopkgtest [12:08:55]: test run-unit-test: -----------------------]
> > autopkgtest [12:08:55]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
> > run-unit-test        FAIL non-zero exit status 139
> > 
> > 
> > I'd love if someone could have a look
> > 
> >       Andreas.
> > 
> 
> 

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