[Debian-med-packaging] Bug#1016645: metaphlan2: package name and description can become confusing

Patrice Duroux patrice.duroux at gmail.com
Thu Aug 4 15:12:39 BST 2022


Package: metaphlan2
Version: 3.0.14-1
Severity: wishlist

Dear Maintainer,

Version 2.0 is EOL since 2 years ago, cf.:
https://github.com/biobakery/MetaPhlAn2
(see also https://huttenhower.sph.harvard.edu/metaphlan2/ that indicates
to look for 3.0)
With 3.0 the official name seems to me MetaPhlAn (without any attached number):
https://github.com/biobakery/MetaPhlAn
with the homepage: http://segatalab.cibio.unitn.it/tools/metaphlan/index.html
(see also https://huttenhower.sph.harvard.edu/metaphlan)

The current package version is already 3.0.14 and the package description is
citing 2.0 in two places but the following one may become strange by the
time, isn't it?
<cut>
 MetaPhlAn 2.0 relies on ~1M unique clade-specific marker genes (the
 marker information file can be found at
 usr/share/metaphlan2/utils/markers_info.txt.bz2) identified from
 ~17,000 reference genomes (~13,500 bacterial and archaeal, ~3,500 viral,
 and ~110 eukaryotic), allowing
<cut>

In any case, many thanks for its maintenance.

Cheers,
Patrice

-- System Information:
Debian Release: bookworm/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 5.17.0-2-amd64 (SMP w/24 CPU threads; PREEMPT)
Kernel taint flags: TAINT_FIRMWARE_WORKAROUND
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages metaphlan2 depends on:
ii  bowtie2              2.4.5-1
ii  metaphlan2-data      2.6.0+ds-4
ii  python3              3.10.5-3
ii  python3-biom-format  2.1.12-1+b1
ii  python3-biopython    1.79+dfsg-3+b1
ii  python3-dendropy     4.5.2-1
ii  python3-h5py-serial  3.7.0-2
ii  python3-msgpack      1.0.3-1+b1
ii  python3-numpy        1:1.21.5-1+b1
ii  python3-pandas       1.3.5+dfsg-5
ii  python3-pysam        0.17.0+ds-2+b2
ii  python3-requests     2.27.1+dfsg-1
ii  python3-scipy        1.8.1-8

metaphlan2 recommends no packages.

metaphlan2 suggests no packages.

-- no debconf information



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