[Debian-med-packaging] Bug#1016454: megadepth: autopkgtest failure on s390x: segmentation fault

[Nilesh Patra]

Hi Bilal,

You added in autopkgtests for this one -- could you please take a look?

On Sun, 31 Jul 2022 22:06:50 +0200 Paul Gevers <elbrus at debian.org> wrote:
> Source: megadepth
> Version: 1.2.0-3
> Severity: serious
> User: debian-ci at lists.debian.org
> Usertags: fails-always
> 
> Dear maintainer(s),
> 
> You recently added an autopkgtest to your package megadepth, great. 
> However, it fails on s390x. Currently this failure is blocking the 
> migration to testing [1]. Can you please investigate the situation and 
> fix it?
> 
> I copied some of the output at the bottom of this report.
> 
> More information about this bug and the reason for filing it can be found on
> https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
> 
> Paul
> 
> [1] https://qa.debian.org/excuses.php?package=megadepth
> 
> https://ci.debian.net/data/autopkgtest/testing/s390x/m/megadepth/23583699/log.gz
> 
> Running Tests
> Test 1
> building whole annotation region map done
> 2 chromosomes for annotated regions read
> 0 chromosomes for annotated regions read, collapsed
> total number of annotations in collapsed: 0
> Processing BAM: "tests/test_noprefix.bam"
> /tmp/autopkgtest-lxc.gmfzuwos/downtmp/build.jJn/src/debian/tests/run-unit-test: 
> line 33:  1590 Segmentation fault      megadepth tests/test_noprefix.bam 
> --prefix test.bam --threads 4 --bigwig --auc --min-unique-qual 10 
> --annotation tests/test_exons.bed --frag-dist --alts --include-softclip 
> --only-polya --read-ends --test-polya --no-annotation-stdout 
> --no-auc-stdout --filter-out 260 --add-chr-prefix human
> autopkgtest [04:42:40]: test run-unit-test
> 

-- 
Best,
Nilesh
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