[Debian-med-packaging] Bug#1017261: jellyfish: FTBFS: dh_missing: error: missing files, aborting

[Lucas Nussbaum]

Source: jellyfish
Version: 2.3.0-14
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20220813 ftbfs-bookworm

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> # Python files are just installed
> rm -rf debian/tmp/usr/lib/python3/dist-packages
> # Necessary Perl files are just installed
> rm -rf debian/tmp/usr/lib/perl/5.*
> dh_missing
> dh_missing: warning: usr/local/lib/python3.10/dist-packages/dna_jellyfish/__init__.pyc exists in debian/tmp but is not installed to anywhere 
> dh_missing: warning: usr/local/lib/python3.10/dist-packages/dna_jellyfish/_dna_jellyfish.a exists in debian/tmp but is not installed to anywhere 
> dh_missing: warning: usr/local/lib/python3.10/dist-packages/dna_jellyfish/_dna_jellyfish.la exists in debian/tmp but is not installed to anywhere 
> dh_missing: warning: usr/local/lib/python3.10/dist-packages/dna_jellyfish/_dna_jellyfish.so exists in debian/tmp but is not installed to anywhere 
> dh_missing: warning: usr/local/lib/python3.10/dist-packages/dna_jellyfish/_dna_jellyfish.so.0 exists in debian/tmp but is not installed to anywhere 
> dh_missing: warning: usr/local/lib/python3.10/dist-packages/dna_jellyfish/_dna_jellyfish.so.0.0.0 exists in debian/tmp but is not installed to anywhere 
> dh_missing: error: missing files, aborting
> 	The following debhelper tools have reported what they installed (with files per package)
> 	 * dh_install: jellyfish (4), jellyfish-examples (0), libjellyfish-2.0-2 (0), libjellyfish-2.0-dev (1), libjellyfish-perl (2), python3-dna-jellyfish (0)
> 	 * dh_installdocs: jellyfish (3), jellyfish-examples (0), libjellyfish-2.0-2 (0), libjellyfish-2.0-dev (0), libjellyfish-perl (0), python3-dna-jellyfish (0)
> 	 * dh_installexamples: jellyfish (0), jellyfish-examples (31), libjellyfish-2.0-2 (0), libjellyfish-2.0-dev (0), libjellyfish-perl (0), python3-dna-jellyfish (0)
> 	 * dh_installman: jellyfish (1), jellyfish-examples (0), libjellyfish-2.0-2 (0), libjellyfish-2.0-dev (0), libjellyfish-perl (0), python3-dna-jellyfish (0)
> 	If the missing files are installed by another tool, please file a bug against it.
> 	When filing the report, if the tool is not part of debhelper itself, please reference the
> 	"Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+).
> 	  (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz)
> 	Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built
> 	If the omission is intentional or no other helper can take care of this consider adding the
> 	paths to debian/not-installed.
> make[1]: *** [debian/rules:112: override_dh_missing] Error 25


The full build log is available from:
http://qa-logs.debian.net/2022/08/13/jellyfish_2.3.0-14_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20220813;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20220813&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.