[Debian-med-packaging] Bug#1025778: libnewuoa breaks libpdb-redo autopkgtest: pdb-redo-example (Failed)

[Paul Gevers]

Source: libnewuoa, libpdb-redo
Control: found -1 libnewuoa/0.1.2-1
Control: found -1 libpdb-redo/2.0.3-1
Severity: serious
Tags: sid bookworm
User: debian-ci at lists.debian.org
Usertags: breaks needs-update

Dear maintainer(s),

With a recent upload of libnewuoa the autopkgtest of libpdb-redo fails 
in testing when that autopkgtest is run with the binary packages of 
libnewuoa from unstable. It passes when run with only packages from 
testing. In tabular form:

                        pass            fail
libnewuoa              from testing    0.1.2-1
libpdb-redo            from testing    2.0.3-1
all others             from testing    from testing

I copied some of the output at the bottom of this report.

Currently this regression is blocking the migration of libnewuoa to 
testing [1]. Due to the nature of this issue, I filed this bug report 
against both packages. Can you please investigate the situation and 
reassign the bug to the right package?

More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=libnewuoa

https://ci.debian.net/data/autopkgtest/testing/amd64/libp/libpdb-redo/29137519/log.gz

-- The CXX compiler identification is GNU 12.2.0
-- The C compiler identification is GNU 12.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Looking for ccp4/ccp4_general.h - /usr/include
-- Found CCP4: /usr/lib/x86_64-linux-gnu/libccp4c.so  -- Performing Test 
CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  -- Looking for clipper/clipper.h - /usr/include
-- Found CCP4: /usr/lib/x86_64-linux-gnu/libclipper-core.so  -- FFTW2 
libraries - /usr/lib/libsfftw.so
--                 - /usr/lib/libsrfftw.so
-- FFTW2 header directory - /usr/include
-- Performing Test _LINKING_WITH_CLIPPER_CORE
-- Performing Test _LINKING_WITH_CLIPPER_CORE - Success
-- Looking for clipper/clipper-ccp4.h - /usr/include
-- Found CCP4: /usr/lib/x86_64-linux-gnu/libclipper-ccp4.so  -- Looking 
for clipper/clipper-contrib.h - /usr/include
-- Found CCP4: /usr/lib/x86_64-linux-gnu/libclipper-contrib.so  -- CCP4 
include directory: /usr/include
-- Found Boost: 
/usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found 
suitable version "1.74.0", minimum required is "1.70.0") found 
components: system iostreams regex -- Found Boost: 
/usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found 
suitable version "1.74.0", minimum required is "1.70.0") found 
components: system date_time regex -- Looking for ccp4/ccp4_general.h - 
/usr/include
-- Found CCP4: /usr/lib/x86_64-linux-gnu/libccp4c.so  -- Looking for 
clipper/clipper.h - /usr/include
-- Found CCP4: /usr/lib/x86_64-linux-gnu/libclipper-core.so  -- FFTW2 
libraries - /usr/lib/libsfftw.so
--                 - /usr/lib/libsrfftw.so
-- FFTW2 header directory - /usr/include
-- Looking for clipper/clipper-ccp4.h - /usr/include
-- Found CCP4: /usr/lib/x86_64-linux-gnu/libclipper-ccp4.so  -- Looking 
for clipper/clipper-contrib.h - /usr/include
-- Found CCP4: /usr/lib/x86_64-linux-gnu/libclipper-contrib.so  -- CCP4 
include directory: /usr/include
-- Configuring done
-- Generating done
-- Build files have been written to: 
/tmp/autopkgtest-lxc.qdh1lkps/downtmp/autopkgtest_tmp/build
[ 50%] Building CXX object CMakeFiles/pdb-redo-example.dir/example.cpp.o
[100%] Linking CXX executable pdb-redo-example
/usr/bin/ld: warning: libnewuoa.so.0, needed by 
/usr/lib/x86_64-linux-gnu/libpdb-redo.so.2.0.3, not found (try using 
-rpath or -rpath-link)
[100%] Built target pdb-redo-example
Test project /tmp/autopkgtest-lxc.qdh1lkps/downtmp/autopkgtest_tmp/build
     Start 1: pdb-redo-example
1/1 Test #1: pdb-redo-example .................***Failed    0.00 sec

0% tests passed, 1 tests failed out of 1

Total Test time (real) =   0.00 sec

The following tests FAILED:
	  1 - pdb-redo-example (Failed)
Errors while running CTest
Output from these tests are in: 
/tmp/autopkgtest-lxc.qdh1lkps/downtmp/autopkgtest_tmp/build/Testing/Temporary/LastTest.log
Use "--rerun-failed --output-on-failure" to re-run the failed cases 
verbosely.
autopkgtest [15:19:23]: test run-unit-test

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