[Debian-med-packaging] Bug#1025424: beast-mcmc: please enable autopkgtest

Andrius Merkys merkys at debian.org
Sun Dec 18 07:29:01 GMT 2022


Hi,

Since #1025953 has been fixed, there are no more blockers for 
autopkgtest. I have tried running some of the examples, some of them 
pass, but there are failing ones:

$ beast-mcmc -overwrite 
/usr/share/doc/beast-mcmc/examples/Calibrations/constrainedTaxaTest3.xml

[snip]

Loading additional development parsers from 
development_parsers.properties, which is additional set of parsers only 
available for development version ...
Parsing XML file: constrainedTaxaTest3.xml
   File encoding: UTF8
Looking for plugins in /home/andrius/plugins

Creating the tree model, 'treeModel'
   taxon count = 4
   tree height = 192.94474192605344
Dec 18, 2022 2:23:13 AM dr.app.beast.BeastMain <init>
SEVERE: Parsing error - poorly formed BEAST file, constrainedTaxaTest3.xml:
Error parsing '<scaleOperator>' element with id, 'null':
Scale operator can only be used on parameters with an infinite upper or 
lower bound (use a RandomWalk) (xx)

Error thrown at: 
dr.inferencexml.operators.ScaleOperatorParser.parseXMLObject(Unknown Source)

Exit code is non-zero. Maybe upstream has forgotten to update the examples?

Best,
Andrius



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