[Debian-med-packaging] Bug#1026554: toil: FTBFS: ModuleNotFoundError: No module named 'cwltool.expression'

Tue Dec 20 17:12:39 GMT 2022

Source: toil
Version: 5.6.0-7
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20221220 ftbfs-bookworm

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.

Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> PYBUILD_SYSTEM=custom \
> 	PYBUILD_TEST_ARGS='HOME={home_dir} {interpreter} setup.py develop --user && PYTHONPATH={dir}/src:$PYTHONPATH PATH={home_dir}/.local/bin/:$PATH TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True {interpreter} -m pytest -vv -W ignore --ignore src/toil/test/lib/aws/test_s3.py --ignore src/toil/test/provisioners/aws/awsProvisionerTest.py --ignore src/toil/test/wdl/toilwdlTest.py --ignore src/toil/test/cwl/cwlTest.py --ignore src/toil/test/src/promisedRequirementTest.py --ignore src/toil/test/lib/test_ec2.py --ignore src/toil/test/batchSystems/batchSystemTest.py -k "not (test_bioconda or test_run_conformance or testImportFtpFile or ToilWdlIntegrationTest or SortTest or testCwlexample or testVirtualEnv or ToilDocumentationTest)" {dir}/src/toil/test' \
> 	dh_auto_test
> I: pybuild base:240: HOME=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil python3.11 setup.py develop --user && PYTHONPATH=/<<PKGBUILDDIR>>/src:$PYTHONPATH PATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/.local/bin/:$PATH TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True python3.11 -m pytest -vv -W ignore --ignore src/toil/test/lib/aws/test_s3.py --ignore src/toil/test/provisioners/aws/awsProvisionerTest.py --ignore src/toil/test/wdl/toilwdlTest.py --ignore src/toil/test/cwl/cwlTest.py --ignore src/toil/test/src/promisedRequirementTest.py --ignore src/toil/test/lib/test_ec2.py --ignore src/toil/test/batchSystems/batchSystemTest.py -k "not (test_bioconda or test_run_conformance or testImportFtpFile or ToilWdlIntegrationTest or SortTest or testCwlexample or testVirtualEnv or ToilDocumentationTest)" /<<PKGBUILDDIR>>/src/toil/test
> /<<PKGBUILDDIR>>/setup.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses
>   import imp
> running develop
> /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:146: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools.
>   warnings.warn(
> /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
>   warnings.warn(
> running egg_info
> creating src/toil.egg-info
> writing src/toil.egg-info/PKG-INFO
> writing dependency_links to src/toil.egg-info/dependency_links.txt
> writing entry points to src/toil.egg-info/entry_points.txt
> writing requirements to src/toil.egg-info/requires.txt
> writing top-level names to src/toil.egg-info/top_level.txt
> writing manifest file 'src/toil.egg-info/SOURCES.txt'
> reading manifest file 'src/toil.egg-info/SOURCES.txt'
> reading manifest template 'MANIFEST.in'
> adding license file 'LICENSE'
> writing manifest file 'src/toil.egg-info/SOURCES.txt'
> running build_ext
> Creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/.local/lib/python3.11/site-packages/toil.egg-link (link to src)
> Adding toil 5.6.0 to easy-install.pth file
> Installing _toil_contained_executor script to /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/.local/bin
> Installing _toil_mesos_executor script to /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/.local/bin
> Installing _toil_worker script to /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/.local/bin
> Installing cwltoil script to /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/.local/bin
> Installing toil script to /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/.local/bin
> Installing toil-cwl-runner script to /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/.local/bin
> Installing toil-wdl-runner script to /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/.local/bin
> 
> Installed /<<PKGBUILDDIR>>/src
> Processing dependencies for toil==5.6.0
> Searching for requests==2.28.1
> Best match: requests 2.28.1
> Adding requests 2.28.1 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for pytz==2022.6
> Best match: pytz 2022.6
> Adding pytz 2022.6 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for python-dateutil==2.8.2
> Best match: python-dateutil 2.8.2
> Adding python-dateutil 2.8.2 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for psutil==5.9.4
> Best match: psutil 5.9.4
> Adding psutil 5.9.4 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for enlighten==1.8.0
> Best match: enlighten 1.8.0
> Adding enlighten 1.8.0 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for docker==5.0.3
> Best match: docker 5.0.3
> Adding docker 5.0.3 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for dill==0.3.6
> Best match: dill 0.3.6
> Adding dill 0.3.6 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Finished processing dependencies for toil==5.6.0
> ============================= test session starts ==============================
> platform linux -- Python 3.11.1, pytest-7.2.0, pluggy-1.0.0+repack -- /usr/bin/python3.11
> cachedir: .pytest_cache
> rootdir: /<<PKGBUILDDIR>>, configfile: setup.cfg
> collecting ... /usr/lib/python3/dist-packages/wdlparse/__init__.py
> collected 561 items / 44 deselected / 517 selected
> 
> src/toil/test/__init__.py::toil.test.make_tests PASSED                   [  0%]
> src/toil/test/__init__.py::toil.test.timeLimit PASSED                    [  0%]
> src/toil/test/batchSystems/test_lsf_helper.py::LSFHelperTest::test_parse_mem_and_cmd_from_output PASSED [  0%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_many_all_exist PASSED [  0%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_one_exists PASSED [  0%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_one_not_exists PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_sacct_raises_job_exists PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_sacct_raises_job_not_exists PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_some_exists PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_many_all_exist PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_many_none_exist PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_many_some_exist PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_one_exists PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_one_not_exists PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_many_all_exist PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_many_none_exist PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_many_some_exist PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_one_exists PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_one_not_exists PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_job_exists PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_job_not_exists PASSED [  4%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_sacct_raises_job_exists PASSED [  4%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_sacct_raises_job_not_exists PASSED [  4%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testBatchCreate PASSED [  4%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testChildLoadingEquality PASSED [  4%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testCleanCache SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testConfigEquality PASSED [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testDestructionIdempotence PASSED [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testDestructionOfCorruptedJobStore SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testEmptyFileStoreIDIsReadable PASSED [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testFileDeletion SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testGrowingAndShrinkingJob PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testImportHttpFile PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testInitialState PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testJobCreation PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testJobDeletions PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testJobLoadEquality PASSED [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testLargeFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testMultipartUploads SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPartialReadFromStream PASSED [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPerJobFiles PASSED [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPersistantFilesToDelete PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPreserveFileName PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testReadWriteFileStreamTextMode PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testReadWriteSharedFilesTextMode PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testSharedFiles PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testStatsAndLogging PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testUpdateBehavior PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testWriteLogFiles PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testZeroLengthFiles PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_jobstore_does_not_leak_symlinks PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_jobstore_init_preserves_symlink_path PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py PASSED [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py PASSED [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest <- src/toil/test/__init__.py PASSED [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testBatchCreate SKIPPED (Install Toil with the 'google' extra to include this test.) [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testChildLoadingEquality SKIPPED (Install Toil with the 'google' extra to include this test.) [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testCleanCache SKIPPED (Install Toil with the 'google' extra to include this test.) [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testConfigEquality SKIPPED (Install Toil with the 'google' extra to include this test.) [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testDestructionIdempotence SKIPPED (Install Toil with the 'google' extra to include this test.) [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testDestructionOfCorruptedJobStore SKIPPED (Install Toil with the 'google' extra to include this test.) [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testEmptyFileStoreIDIsReadable SKIPPED (Install Toil with the 'google' extra to include this test.) [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testFileDeletion SKIPPED (Install Toil with the 'google' extra to include this test.) [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testGrowingAndShrinkingJob SKIPPED (Install Toil with the 'google' extra to include this test.) [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testImportHttpFile SKIPPED (Install Toil with the 'google' extra to include this test.) [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testInitialState SKIPPED (Install Toil with the 'google' extra to include this test.) [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testJobCreation SKIPPED (Install Toil with the 'google' extra to include this test.) [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testJobDeletions SKIPPED (Install Toil with the 'google' extra to include this test.) [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testJobLoadEquality SKIPPED (Install Toil with the 'google' extra to include this test.) [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testLargeFile SKIPPED (Install Toil with the 'google' extra to include this test.) [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testMultipartUploads SKIPPED (Install Toil with the 'google' extra to include this test.) [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testPartialReadFromStream SKIPPED (Install Toil with the 'google' extra to include this test.) [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testPerJobFiles SKIPPED (Install Toil with the 'google' extra to include this test.) [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testPersistantFilesToDelete SKIPPED (Install Toil with the 'google' extra to include this test.) [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testReadWriteFileStreamTextMode SKIPPED (Install Toil with the 'google' extra to include this test.) [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testReadWriteSharedFilesTextMode SKIPPED (Install Toil with the 'google' extra to include this test.) [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testSharedFiles SKIPPED (Install Toil with the 'google' extra to include this test.) [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testStatsAndLogging SKIPPED (Install Toil with the 'google' extra to include this test.) [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testUpdateBehavior SKIPPED (Install Toil with the 'google' extra to include this test.) [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testWriteLogFiles SKIPPED (Install Toil with the 'google' extra to include this test.) [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testZeroLengthFiles SKIPPED (Install Toil with the 'google' extra to include this test.) [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testBatchCreate SKIPPED (Configure AWS credentials to include this test.) [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testChildLoadingEquality SKIPPED (Configure AWS credentials to include this test.) [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testCleanCache SKIPPED (Configure AWS credentials to include this test.) [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testConfigEquality SKIPPED (Configure AWS credentials to include this test.) [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testDestructionIdempotence SKIPPED (Configure AWS credentials to include this test.) [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testDestructionOfCorruptedJobStore SKIPPED (Configure AWS credentials to include this test.) [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testEmptyFileStoreIDIsReadable SKIPPED (Configure AWS credentials to include this test.) [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testFileDeletion SKIPPED (Configure AWS credentials to include this test.) [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testGrowingAndShrinkingJob SKIPPED (Configure AWS credentials to include this test.) [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testImportHttpFile SKIPPED (Configure AWS credentials to include this test.) [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testInitialState SKIPPED (Configure AWS credentials to include this test.) [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testInlinedFiles SKIPPED (Configure AWS credentials to include this test.) [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testJobCreation SKIPPED (Configure AWS credentials to include this test.) [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testJobDeletions SKIPPED (Configure AWS credentials to include this test.) [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testJobLoadEquality SKIPPED (Configure AWS credentials to include this test.) [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testLargeFile SKIPPED (Configure AWS credentials to include this test.) [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testMultiThreadImportFile SKIPPED (Configure AWS credentials to include this test.) [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testMultipartUploads SKIPPED (Configure AWS credentials to include this test.) [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testOverlargeJob SKIPPED (Configure AWS credentials to include this test.) [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testPartialReadFromStream SKIPPED (Configure AWS credentials to include this test.) [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testPerJobFiles SKIPPED (Configure AWS credentials to include this test.) [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testPersistantFilesToDelete SKIPPED (Configure AWS credentials to include this test.) [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testReadWriteFileStreamTextMode SKIPPED (Configure AWS credentials to include this test.) [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testReadWriteSharedFilesTextMode SKIPPED (Configure AWS credentials to include this test.) [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testSDBDomainsDeletedOnFailedJobstoreBucketCreation SKIPPED (Configure AWS credentials to include this test.) [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testSharedFiles SKIPPED (Configure AWS credentials to include this test.) [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testStatsAndLogging SKIPPED (Configure AWS credentials to include this test.) [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testUpdateBehavior SKIPPED (Configure AWS credentials to include this test.) [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testWriteLogFiles SKIPPED (Configure AWS credentials to include this test.) [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testZeroLengthFiles SKIPPED (Configure AWS credentials to include this test.) [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::InvalidAWSJobStoreTest::testInvalidJobStoreName SKIPPED (Configure AWS credentials to include this test.) [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testBatchCreate SKIPPED (Configure AWS credentials to include this test.) [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testChildLoadingEquality SKIPPED (Configure AWS credentials to include this test.) [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testCleanCache SKIPPED (Configure AWS credentials to include this test.) [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testConfigEquality SKIPPED (Configure AWS credentials to include this test.) [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testDestructionIdempotence SKIPPED (Configure AWS credentials to include this test.) [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testDestructionOfCorruptedJobStore SKIPPED (Configure AWS credentials to include this test.) [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testEmptyFileStoreIDIsReadable SKIPPED (Configure AWS credentials to include this test.) [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testEncrypted SKIPPED (Configure AWS credentials to include this test.) [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testFileDeletion SKIPPED (Configure AWS credentials to include this test.) [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testGrowingAndShrinkingJob SKIPPED (Configure AWS credentials to include this test.) [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testImportHttpFile SKIPPED (Configure AWS credentials to include this test.) [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testInitialState SKIPPED (Configure AWS credentials to include this test.) [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testInlinedFiles SKIPPED (Configure AWS credentials to include this test.) [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testJobCreation SKIPPED (Configure AWS credentials to include this test.) [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testJobDeletions SKIPPED (Configure AWS credentials to include this test.) [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testJobLoadEquality SKIPPED (Configure AWS credentials to include this test.) [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testLargeFile SKIPPED (Configure AWS credentials to include this test.) [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testMultiThreadImportFile SKIPPED (Configure AWS credentials to include this test.) [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testMultipartUploads SKIPPED (Configure AWS credentials to include this test.) [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testOverlargeJob SKIPPED (Configure AWS credentials to include this test.) [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testPartialReadFromStream SKIPPED (Configure AWS credentials to include this test.) [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testPerJobFiles SKIPPED (Configure AWS credentials to include this test.) [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testPersistantFilesToDelete SKIPPED (Configure AWS credentials to include this test.) [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testReadWriteFileStreamTextMode SKIPPED (Configure AWS credentials to include this test.) [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testReadWriteSharedFilesTextMode SKIPPED (Configure AWS credentials to include this test.) [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testSDBDomainsDeletedOnFailedJobstoreBucketCreation SKIPPED (Configure AWS credentials to include this test.) [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testSharedFiles SKIPPED (Configure AWS credentials to include this test.) [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testStatsAndLogging SKIPPED (Configure AWS credentials to include this test.) [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testUpdateBehavior SKIPPED (Configure AWS credentials to include this test.) [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testWriteLogFiles SKIPPED (Configure AWS credentials to include this test.) [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testZeroLengthFiles SKIPPED (Configure AWS credentials to include this test.) [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean SKIPPED (Skipping docker test.) [ 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_FORGO SKIPPED (Skipping docker test.) [ 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_None SKIPPED (Skipping docker test.) [ 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_RM SKIPPED (Skipping docker test.) [ 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_STOP SKIPPED (Skipping docker test.) [ 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_FORGO SKIPPED (Skipping docker test.) [ 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_None SKIPPED (Skipping docker test.) [ 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_RM SKIPPED (Skipping docker test.) [ 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_STOP SKIPPED (Skipping docker test.) [ 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_FORGO SKIPPED (Skipping docker test.) [ 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_None SKIPPED (Skipping docker test.) [ 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_RM SKIPPED (Skipping docker test.) [ 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_STOP SKIPPED (Skipping docker test.) [ 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_FORGO SKIPPED (Skipping docker test.) [ 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_None SKIPPED (Skipping docker test.) [ 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_RM SKIPPED (Skipping docker test.) [ 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_STOP SKIPPED (Skipping docker test.) [ 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_FORGO SKIPPED (Skipping docker test.) [ 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_None SKIPPED (Skipping docker test.) [ 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_RM SKIPPED (Skipping docker test.) [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_STOP SKIPPED (Skipping docker test.) [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_FORGO SKIPPED (Skipping docker test.) [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_None SKIPPED (Skipping docker test.) [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_RM SKIPPED (Skipping docker test.) [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_STOP SKIPPED (Skipping docker test.) [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs SKIPPED (Skipping docker test.) [ 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs_Demux SKIPPED (Skipping docker test.) [ 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs_Demux_Stream SKIPPED (Skipping docker test.) [ 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs_Stream SKIPPED (Skipping docker test.) [ 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerPipeChain SKIPPED (Skipping docker test.) [ 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerPipeChainErrorDetection SKIPPED (Skipping docker test.) [ 43%]
> src/toil/test/lib/dockerTest.py::DockerTest::testNonCachingDockerChain SKIPPED (Skipping docker test.) [ 43%]
> src/toil/test/lib/dockerTest.py::DockerTest::testNonCachingDockerChainErrorDetection SKIPPED (Skipping docker test.) [ 43%]
> src/toil/test/lib/test_conversions.py::ConversionTest::test_convert PASSED [ 43%]
> src/toil/test/lib/test_conversions.py::ConversionTest::test_hms_duration_to_seconds PASSED [ 43%]
> src/toil/test/lib/test_conversions.py::ConversionTest::test_human2bytes PASSED [ 44%]
> src/toil/test/mesos/MesosDataStructuresTest.py::DataStructuresTest::testJobQueue PASSED [ 44%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testAddingInitialNode PASSED [ 44%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testHighTargetTime PASSED [ 44%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testJobTooLargeForAllNodes PASSED [ 44%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testLongRunningJobs PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testLowTargetTime PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testPackingOneShape PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testPathologicalCase PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testSorting PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testZeroResourceJobs PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testBetaInertia PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testMaxNodes PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testMinNodes PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testNoLaunchingIfDeltaAlreadyMet PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testPreemptableDeficitIsSet PASSED [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testPreemptableDeficitResponse PASSED [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testRounding PASSED [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ScalerThreadTest::testClusterScaling SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ScalerThreadTest::testClusterScalingMultipleNodeTypes SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ScalerThreadTest::testClusterScalingWithPreemptableJobs SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 47%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTest::testAutoScale SKIPPED (Install Toil with the 'google' extra to include this test.) [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTest::testSpotAutoScale SKIPPED (Install Toil with the 'google' extra to include this test.) [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEStaticAutoscaleTest::testAutoScale SKIPPED (Install Toil with the 'google' extra to include this test.) [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEStaticAutoscaleTest::testSpotAutoScale SKIPPED (Install Toil with the 'google' extra to include this test.) [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTestMultipleNodeTypes::testAutoScale SKIPPED (Install Toil with the 'google' extra to include this test.) [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCERestartTest::testAutoScaledCluster SKIPPED (Install Toil with the 'google' extra to include this test.) [ 49%]
> src/toil/test/provisioners/provisionerTest.py::ProvisionerTest::test_node_type_parsing PASSED [ 49%]
> src/toil/test/server/serverTest.py::ToilWESServerTest::test_get_service_info SKIPPED (Install Toil with the 'server' extra to include this test.) [ 49%]
> src/toil/test/server/serverTest.py::ToilWESServerTest::test_run_example_cwl_workflow SKIPPED (Install Toil with the 'server' extra to include this test.) [ 49%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testDeferralWithConcurrentEncapsulation SKIPPED (Install Mesos (and Toil with the 'mesos' extra) to include this test.) [ 49%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testDeferralWithFailureAndEncapsulation SKIPPED (Install Mesos (and Toil with the 'mesos' extra) to include this test.) [ 50%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testRestart SKIPPED (Install Mesos (and Toil with the 'mesos' extra) to include this test.) [ 50%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testSplitRootPackages SKIPPED (Install Mesos (and Toil with the 'mesos' extra) to include this test.) [ 50%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testUserTypesInJobFunctionArgs SKIPPED (Install Mesos (and Toil with the 'mesos' extra) to include this test.) [ 50%]
> src/toil/test/src/checkpointTest.py::CheckpointTest::testCheckpointNotRetried PASSED [ 50%]
> src/toil/test/src/checkpointTest.py::CheckpointTest::testCheckpointRetriedOnce SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 51%]
> src/toil/test/src/checkpointTest.py::CheckpointTest::testCheckpointedRestartSucceeds SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 51%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testBatchSystemCleanupCanHandleWorkerDeaths PASSED [ 51%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testDeferredFunctionRunsWithClassMethod PASSED [ 51%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testDeferredFunctionRunsWithFailures SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 51%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testDeferredFunctionRunsWithLambda PASSED [ 52%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testDeferredFunctionRunsWithMethod PASSED [ 52%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testNewJobsCanHandleOtherJobDeaths SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 52%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testApplianceParser SKIPPED (Skipping docker test.) [ 52%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadGoogleRepo SKIPPED (Skipping docker test.) [ 52%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadQuayRepo SKIPPED (Skipping docker test.) [ 52%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadQuayRepoNTag SKIPPED (Skipping docker test.) [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadQuayTag SKIPPED (Skipping docker test.) [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBroadDockerRepo SKIPPED (Skipping docker test.) [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBroadDockerRepoBadTag SKIPPED (Skipping docker test.) [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testGoogleRepo SKIPPED (Skipping docker test.) [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testNonexistentRepo SKIPPED (Skipping docker test.) [ 54%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testOfficialUbuntuRepo SKIPPED (Skipping docker test.) [ 54%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testToilQuayRepo SKIPPED (Skipping docker test.) [ 54%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testFileStoreLogging SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 54%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testFileStoreOperations SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 54%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testImportReadFileCompatibility PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testReadWriteFileStreamTextMode PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testToilIsNotBroken PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testWriteExportFileCompatibility PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testWriteReadGlobalFilePermissions PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testAsyncWriteWithCaching SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testCacheEvictionFailCase SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testCacheEvictionPartialEvict SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testCacheEvictionTotalEvict SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testControlledFailedWorkerRetry SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testDeleteLocalFile PASSED [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testExtremeCacheSetup SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testFileStoreExportFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testFileStoreLogging SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testFileStoreOperations SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testImportReadFileCompatibility PASSED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testMultipleJobsReadSameCacheHitGlobalFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testMultipleJobsReadSameCacheMissGlobalFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadCachHitFileFromJobStore PASSED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadCacheMissFileFromJobStoreWithCachingReadFile PASSED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadCacheMissFileFromJobStoreWithoutCachingReadFile PASSED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadWriteFileStreamTextMode PASSED [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testRemoveLocalImmutablyReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testRemoveLocalMutablyReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReturnFileSizes SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReturnFileSizesWithBadWorker SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testSimultaneousReadsUncachedStream PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testToilIsNotBroken PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteExportFileCompatibility PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteLocalFileToJobStore PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteNonLocalFileToJobStore PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteReadGlobalFilePermissions PASSED [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testFileStoreLogging SKIPPED (Set TOIL_AWS_KEYNAME to an AWS-stored SSH key to include this test.) [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testFileStoreOperations SKIPPED (Set TOIL_AWS_KEYNAME to an AWS-stored SSH key to include this test.) [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testImportReadFileCompatibility SKIPPED (Set TOIL_AWS_KEYNAME to an AWS-stored SSH key to include this test.) [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testReadWriteFileStreamTextMode SKIPPED (Set TOIL_AWS_KEYNAME to an AWS-stored SSH key to include this test.) [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testToilIsNotBroken SKIPPED (Set TOIL_AWS_KEYNAME to an AWS-stored SSH key to include this test.) [ 62%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testWriteExportFileCompatibility SKIPPED (Set TOIL_AWS_KEYNAME to an AWS-stored SSH key to include this test.) [ 62%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testWriteReadGlobalFilePermissions SKIPPED (Set TOIL_AWS_KEYNAME to an AWS-stored SSH key to include this test.) [ 62%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testAsyncWriteWithCaching SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 62%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testCacheEvictionFailCase SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 62%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testCacheEvictionPartialEvict SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testCacheEvictionTotalEvict SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testControlledFailedWorkerRetry SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testDeleteLocalFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testExtremeCacheSetup SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testFileStoreExportFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testFileStoreLogging SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testFileStoreOperations SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testImportReadFileCompatibility SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testMultipleJobsReadSameCacheHitGlobalFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testMultipleJobsReadSameCacheMissGlobalFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadCachHitFileFromJobStore SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadCacheMissFileFromJobStoreWithCachingReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadCacheMissFileFromJobStoreWithoutCachingReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadWriteFileStreamTextMode SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testRemoveLocalImmutablyReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testRemoveLocalMutablyReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReturnFileSizes SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReturnFileSizesWithBadWorker SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testSimultaneousReadsUncachedStream SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testToilIsNotBroken SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteExportFileCompatibility SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 67%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteLocalFileToJobStore SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 67%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteNonLocalFileToJobStore SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 67%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteReadGlobalFilePermissions SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 67%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testFileStoreLogging SKIPPED (Install Toil with the 'google' extra to include this test.) [ 67%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testFileStoreOperations SKIPPED (Install Toil with the 'google' extra to include this test.) [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testImportReadFileCompatibility SKIPPED (Install Toil with the 'google' extra to include this test.) [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testReadWriteFileStreamTextMode SKIPPED (Install Toil with the 'google' extra to include this test.) [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testToilIsNotBroken SKIPPED (Install Toil with the 'google' extra to include this test.) [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testWriteExportFileCompatibility SKIPPED (Install Toil with the 'google' extra to include this test.) [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testWriteReadGlobalFilePermissions SKIPPED (Install Toil with the 'google' extra to include this test.) [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testAsyncWriteWithCaching SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testCacheEvictionFailCase SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testCacheEvictionPartialEvict SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testCacheEvictionTotalEvict SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testControlledFailedWorkerRetry SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testDeleteLocalFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testExtremeCacheSetup SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testFileStoreExportFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testFileStoreLogging SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testFileStoreOperations SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testImportReadFileCompatibility SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testMultipleJobsReadSameCacheHitGlobalFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testMultipleJobsReadSameCacheMissGlobalFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadCachHitFileFromJobStore SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadCacheMissFileFromJobStoreWithCachingReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadCacheMissFileFromJobStoreWithoutCachingReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadWriteFileStreamTextMode SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testRemoveLocalImmutablyReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testRemoveLocalMutablyReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReturnFileSizes SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReturnFileSizesWithBadWorker SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testSimultaneousReadsUncachedStream SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testToilIsNotBroken SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteExportFileCompatibility SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteLocalFileToJobStore SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteNonLocalFileToJobStore SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 74%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteReadGlobalFilePermissions SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 74%]
> src/toil/test/src/helloWorldTest.py::HelloWorldTest::testHelloWorld PASSED [ 74%]
> src/toil/test/src/importExportFileTest.py::ImportExportFileTest::test_basic_import_export PASSED [ 74%]
> src/toil/test/src/importExportFileTest.py::ImportExportFileTest::test_import_export_restart_false PASSED [ 74%]
> src/toil/test/src/importExportFileTest.py::ImportExportFileTest::test_import_export_restart_true SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 75%]
> src/toil/test/src/jobDescriptionTest.py::JobDescriptionTest::testJobDescription PASSED [ 75%]
> src/toil/test/src/jobDescriptionTest.py::JobDescriptionTest::testJobDescriptionSequencing PASSED [ 75%]
> src/toil/test/src/jobEncapsulationTest.py::JobEncapsulationTest::testAddChildEncapsulate PASSED [ 75%]
> src/toil/test/src/jobEncapsulationTest.py::JobEncapsulationTest::testEncapsulation PASSED [ 75%]
> src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testCachingFileStore PASSED [ 76%]
> src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testJobFileStore PASSED [ 76%]
> src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testJobFileStoreWithBadWorker SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 76%]
> src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testNonCachingFileStore PASSED [ 76%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testService SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 76%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceDeadlock SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 76%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceParallelRecursive SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 77%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceRecursive SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 77%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceSerialization SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 77%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceWithCheckpoints SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 77%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testService SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 77%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceDeadlock SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 78%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceParallelRecursive SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 78%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceRecursive SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 78%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceSerialization SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 78%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceWithCheckpoints SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 78%]
> src/toil/test/src/jobTest.py::JobTest::testDAGConsistency PASSED         [ 79%]
> src/toil/test/src/jobTest.py::JobTest::testDeadlockDetection PASSED      [ 79%]
> src/toil/test/src/jobTest.py::JobTest::testEvaluatingRandomDAG SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 79%]
> src/toil/test/src/jobTest.py::JobTest::testNewCheckpointIsLeafVertexNonRootCase SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 79%]
> src/toil/test/src/jobTest.py::JobTest::testNewCheckpointIsLeafVertexRootCase SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 79%]
> src/toil/test/src/jobTest.py::JobTest::testSiblingDAGConsistency SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 80%]
> src/toil/test/src/jobTest.py::JobTest::testStatic SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 80%]
> src/toil/test/src/jobTest.py::JobTest::testStatic2 PASSED                [ 80%]
> src/toil/test/src/jobTest.py::JobTest::testTrivialDAGConsistency SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 80%]
> src/toil/test/src/miscTests.py::MiscTests::testGetSizeOfDirectoryWorks SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 80%]
> src/toil/test/src/miscTests.py::MiscTests::testIDStability PASSED        [ 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_atomic_context_error PASSED [ 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_atomic_context_ok PASSED [ 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_atomic_install PASSED    [ 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_atomic_install_dev PASSED [ 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_call_command_err PASSED  [ 82%]
> src/toil/test/src/miscTests.py::MiscTests::test_call_command_ok PASSED   [ 82%]
> src/toil/test/src/miscTests.py::TestPanic::test_nested_panic PASSED      [ 82%]
> src/toil/test/src/miscTests.py::TestPanic::test_panic PASSED             [ 82%]
> src/toil/test/src/miscTests.py::TestPanic::test_panic_by_hand PASSED     [ 82%]
> src/toil/test/src/miscTests.py::TestPanic::test_panic_with_secondary PASSED [ 82%]
> src/toil/test/src/promisesTest.py::CachedUnpicklingJobStoreTest::test PASSED [ 83%]
> src/toil/test/src/promisesTest.py::ChainedIndexedPromisesTest::test PASSED [ 83%]
> src/toil/test/src/promisesTest.py::PathIndexingPromiseTest::test PASSED  [ 83%]
> src/toil/test/src/realtimeLoggerTest.py::RealtimeLoggerTest::testRealtimeLogger PASSED [ 83%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testLogToMaster SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 83%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testMultipleLogToMaster SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 84%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testRegularLog PASSED [ 84%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testWriteGzipLogs SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 84%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testWriteLogs PASSED [ 84%]
> src/toil/test/src/resourceTest.py::ResourceTest::testBuiltIn PASSED      [ 84%]
> src/toil/test/src/resourceTest.py::ResourceTest::testNonPyStandAlone PASSED [ 85%]
> src/toil/test/src/resourceTest.py::ResourceTest::testPackage PASSED      [ 85%]
> src/toil/test/src/resourceTest.py::ResourceTest::testStandAlone PASSED   [ 85%]
> src/toil/test/src/resourceTest.py::ResourceTest::testStandAloneInPackage PASSED [ 85%]
> src/toil/test/src/restartDAGTest.py::RestartDAGTest::testRestartedWorkflowSchedulesCorrectJobsOnFailedParent SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 85%]
> src/toil/test/src/restartDAGTest.py::RestartDAGTest::testRestartedWorkflowSchedulesCorrectJobsOnKilledParent SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 86%]
> src/toil/test/src/resumabilityTest.py::ResumabilityTest::test SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 86%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testAlways PASSED [ 86%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testNever PASSED [ 86%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testOnErrorWithError PASSED [ 86%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testOnErrorWithNoError PASSED [ 87%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testOnSuccessWithError PASSED [ 87%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testOnSuccessWithSuccess PASSED [ 87%]
> src/toil/test/src/systemTest.py::SystemTest::testAtomicityOfNonEmptyDirectoryRenames PASSED [ 87%]
> src/toil/test/src/threadingTest.py::ThreadingTest::testGlobalMutexOrdering PASSED [ 87%]
> src/toil/test/src/threadingTest.py::ThreadingTest::testLastProcessStanding PASSED [ 88%]
> src/toil/test/src/toilContextManagerTest.py::ToilContextManagerTest::testContextManger SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 88%]
> src/toil/test/src/toilContextManagerTest.py::ToilContextManagerTest::testExportAfterFailedExport SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 88%]
> src/toil/test/src/toilContextManagerTest.py::ToilContextManagerTest::testNoContextManger SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 88%]
> src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobClass SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 88%]
> src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobClassFromMain PASSED [ 88%]
> src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobFunction PASSED [ 89%]
> src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobFunctionFromMain PASSED [ 89%]
> src/toil/test/src/workerTest.py::WorkerTests::testNextChainable PASSED   [ 89%]
> src/toil/test/utils/toilDebugTest.py::ToilDebugFileTest::testFetchJobStoreFiles PASSED [ 89%]
> src/toil/test/utils/toilDebugTest.py::ToilDebugFileTest::testFetchJobStoreFilesWSymlinks PASSED [ 89%]
> src/toil/test/utils/toilDebugTest.py::ToilDebugFileTest::testJobStoreContents SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 90%]
> src/toil/test/utils/toilKillTest.py::ToilKillTest::test_cwl_toil_kill FAILED [ 90%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testAWSProvisionerUtils SKIPPED (Set TOIL_AWS_KEYNAME to an AWS-stored SSH key to include this test.) [ 90%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testGetPIDStatus PASSED     [ 90%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusFailedCWLWF SKIPPED (Skipping docker test.) [ 90%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusFailedToilWF PASSED [ 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusSuccessfulCWLWF SKIPPED (Skipping docker test.) [ 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testMultipleJobsPerWorkerStats SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testPrintJobLog FAILED      [ 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testRestartAttribute PASSED [ 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testUnicodeSupport PASSED   [ 92%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testUtilsSort SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 92%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testUtilsStatsSort SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 92%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Ceil PASSED [ 92%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Cross PASSED [ 92%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Floor PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Length PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadBoolean PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadFloat PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadInt PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadJson PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadLines PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadMap PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadString PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadTsv PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Sub PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Transpose PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_WriteJson PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_WriteLines PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_WriteMap PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_WriteTsv PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Zip PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlLanguageSpecWorkflowsTest::test_type_pair PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlLanguageSpecWorkflowsTest::test_v1_declaration PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_as_map PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_as_pairs PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_ceil PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_collect_by_key PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_cross PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_flatten PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_floor PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_keys PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_length PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_range PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_read PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_round PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_size PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_stdout PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_sub PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_transpose PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_write PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_zip PASSED [100%]
> 
> =================================== FAILURES ===================================
> _______________________ ToilKillTest.test_cwl_toil_kill ________________________
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/src/toil/test/utils/toilKillTest.py", line 55, in test_cwl_toil_kill
>     assert cwl_process.poll()==None
>            ^^^^^^^^^^^^^^^^^^^^^^^^
> AssertionError
> ---------------------------- Captured stdout setup -----------------------------
> 
> 
> [TEST] toil.test.utils.toilKillTest.ToilKillTest:test_cwl_toil_kill (Dec 20 2022 10:07:15:407059 PST)
> 
> 
> ----------------------------- Captured stderr call -----------------------------
> You are using cwltool version 3.1.20221109155812, which might not be compatible with version 3.1.20220119140128 used by Toil. You should consider running 'pip install cwltool==3.1.20220119140128' to match Toil's cwltool version.
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/.local/bin/toil-cwl-runner", line 33, in <module>
>     sys.exit(load_entry_point('toil', 'console_scripts', 'toil-cwl-runner')())
>              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/.local/bin/toil-cwl-runner", line 25, in importlib_load_entry_point
>     return next(matches).load()
>            ^^^^^^^^^^^^^^^^^^^^
>   File "/usr/lib/python3.11/importlib/metadata/__init__.py", line 205, in load
>     module = import_module(match.group('module'))
>              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>   File "/usr/lib/python3.11/importlib/__init__.py", line 126, in import_module
>     return _bootstrap._gcd_import(name[level:], package, level)
>            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>   File "<frozen importlib._bootstrap>", line 1206, in _gcd_import
>   File "<frozen importlib._bootstrap>", line 1178, in _find_and_load
>   File "<frozen importlib._bootstrap>", line 1149, in _find_and_load_unlocked
>   File "<frozen importlib._bootstrap>", line 690, in _load_unlocked
>   File "<frozen importlib._bootstrap_external>", line 940, in exec_module
>   File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
>   File "/<<PKGBUILDDIR>>/src/toil/cwl/cwltoil.py", line 61, in <module>
>     import cwltool.expression
> ModuleNotFoundError: No module named 'cwltool.expression'
> __________________________ UtilsTest.testPrintJobLog ___________________________
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/src/toil/test/utils/utilsTest.py", line 352, in testPrintJobLog
>     status = ToilStatus(self.toilDir)
>              ^^^^^^^^^^^^^^^^^^^^^^^^
>   File "/<<PKGBUILDDIR>>/src/toil/utils/toilStatus.py", line 35, in __init__
>     self.jobStore = Toil.resumeJobStore(jobStoreName)
>                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>   File "/<<PKGBUILDDIR>>/src/toil/common.py", line 1042, in resumeJobStore
>     jobStore.resume()
>   File "/<<PKGBUILDDIR>>/src/toil/jobStores/fileJobStore.py", line 116, in resume
>     raise NoSuchJobStoreException(self.jobStoreDir)
> toil.jobStores.abstractJobStore.NoSuchJobStoreException: The job store '/tmp/toil-test-utils.utilsTest.UtilsTest-testPrintJobLog-hr9hl6g5/jobstore' does not exist, so there is nothing to restart.
> ---------------------------- Captured stdout setup -----------------------------
> 
> 
> [TEST] toil.test.utils.utilsTest.UtilsTest:testPrintJobLog (Dec 20 2022 10:07:31:439460 PST)
> 
> 
> ----------------------------- Captured stderr call -----------------------------
> You are using cwltool version 3.1.20221109155812, which might not be compatible with version 3.1.20220119140128 used by Toil. You should consider running 'pip install cwltool==3.1.20220119140128' to match Toil's cwltool version.
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/.local/bin/toil-cwl-runner", line 33, in <module>
>     sys.exit(load_entry_point('toil', 'console_scripts', 'toil-cwl-runner')())
>              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/.local/bin/toil-cwl-runner", line 25, in importlib_load_entry_point
>     return next(matches).load()
>            ^^^^^^^^^^^^^^^^^^^^
>   File "/usr/lib/python3.11/importlib/metadata/__init__.py", line 205, in load
>     module = import_module(match.group('module'))
>              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>   File "/usr/lib/python3.11/importlib/__init__.py", line 126, in import_module
>     return _bootstrap._gcd_import(name[level:], package, level)
>            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>   File "<frozen importlib._bootstrap>", line 1206, in _gcd_import
>   File "<frozen importlib._bootstrap>", line 1178, in _find_and_load
>   File "<frozen importlib._bootstrap>", line 1149, in _find_and_load_unlocked
>   File "<frozen importlib._bootstrap>", line 690, in _load_unlocked
>   File "<frozen importlib._bootstrap_external>", line 940, in exec_module
>   File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
>   File "/<<PKGBUILDDIR>>/src/toil/cwl/cwltoil.py", line 61, in <module>
>     import cwltool.expression
> ModuleNotFoundError: No module named 'cwltool.expression'
> ------------------------------ Captured log call -------------------------------
> INFO     toil.test:__init__.py:109 Setting up toil.test.utils.utilsTest.UtilsTest.testPrintJobLog ...
> INFO     toil.test:__init__.py:114 Tore down toil.test.utils.utilsTest.UtilsTest.testPrintJobLog
> =========================== short test summary info ============================
> FAILED src/toil/test/utils/toilKillTest.py::ToilKillTest::test_cwl_toil_kill
> FAILED src/toil/test/utils/utilsTest.py::UtilsTest::testPrintJobLog - toil.jo...
> ==== 2 failed, 196 passed, 319 skipped, 44 deselected in 1340.00s (0:22:20) ====
> E: pybuild pybuild:386: test: plugin custom failed with: exit code=1: HOME=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil python3.11 setup.py develop --user && PYTHONPATH=/<<PKGBUILDDIR>>/src:$PYTHONPATH PATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_toil/.local/bin/:$PATH TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True python3.11 -m pytest -vv -W ignore --ignore src/toil/test/lib/aws/test_s3.py --ignore src/toil/test/provisioners/aws/awsProvisionerTest.py --ignore src/toil/test/wdl/toilwdlTest.py --ignore src/toil/test/cwl/cwlTest.py --ignore src/toil/test/src/promisedRequirementTest.py --ignore src/toil/test/lib/test_ec2.py --ignore src/toil/test/batchSystems/batchSystemTest.py -k "not (test_bioconda or test_run_conformance or testImportFtpFile or ToilWdlIntegrationTest or SortTest or testCwlexample or testVirtualEnv or ToilDocumentationTest)" /<<PKGBUILDDIR>>/src/toil/test
> I: pybuild base:240: HOME=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil python3.10 setup.py develop --user && PYTHONPATH=/<<PKGBUILDDIR>>/src:$PYTHONPATH PATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin/:$PATH TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True python3.10 -m pytest -vv -W ignore --ignore src/toil/test/lib/aws/test_s3.py --ignore src/toil/test/provisioners/aws/awsProvisionerTest.py --ignore src/toil/test/wdl/toilwdlTest.py --ignore src/toil/test/cwl/cwlTest.py --ignore src/toil/test/src/promisedRequirementTest.py --ignore src/toil/test/lib/test_ec2.py --ignore src/toil/test/batchSystems/batchSystemTest.py -k "not (test_bioconda or test_run_conformance or testImportFtpFile or ToilWdlIntegrationTest or SortTest or testCwlexample or testVirtualEnv or ToilDocumentationTest)" /<<PKGBUILDDIR>>/src/toil/test
> /<<PKGBUILDDIR>>/setup.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses
>   import imp
> running develop
> /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:146: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools.
>   warnings.warn(
> /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
>   warnings.warn(
> running egg_info
> writing src/toil.egg-info/PKG-INFO
> writing dependency_links to src/toil.egg-info/dependency_links.txt
> writing entry points to src/toil.egg-info/entry_points.txt
> writing requirements to src/toil.egg-info/requires.txt
> writing top-level names to src/toil.egg-info/top_level.txt
> reading manifest file 'src/toil.egg-info/SOURCES.txt'
> reading manifest template 'MANIFEST.in'
> adding license file 'LICENSE'
> writing manifest file 'src/toil.egg-info/SOURCES.txt'
> running build_ext
> Creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/lib/python3.10/site-packages/toil.egg-link (link to src)
> Adding toil 5.6.0 to easy-install.pth file
> Installing _toil_contained_executor script to /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin
> Installing _toil_mesos_executor script to /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin
> Installing _toil_worker script to /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin
> Installing cwltoil script to /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin
> Installing toil script to /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin
> Installing toil-cwl-runner script to /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin
> Installing toil-wdl-runner script to /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin
> 
> Installed /<<PKGBUILDDIR>>/src
> Processing dependencies for toil==5.6.0
> Searching for requests==2.28.1
> Best match: requests 2.28.1
> Adding requests 2.28.1 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for pytz==2022.6
> Best match: pytz 2022.6
> Adding pytz 2022.6 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for python-dateutil==2.8.2
> Best match: python-dateutil 2.8.2
> Adding python-dateutil 2.8.2 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for psutil==5.9.4
> Best match: psutil 5.9.4
> Adding psutil 5.9.4 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for enlighten==1.8.0
> Best match: enlighten 1.8.0
> Adding enlighten 1.8.0 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for docker==5.0.3
> Best match: docker 5.0.3
> Adding docker 5.0.3 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for dill==0.3.6
> Best match: dill 0.3.6
> Adding dill 0.3.6 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Finished processing dependencies for toil==5.6.0
> ============================= test session starts ==============================
> platform linux -- Python 3.10.9, pytest-7.2.0, pluggy-1.0.0+repack -- /usr/bin/python3.10
> cachedir: .pytest_cache
> rootdir: /<<PKGBUILDDIR>>, configfile: setup.cfg
> collecting ... /usr/lib/python3/dist-packages/wdlparse/__init__.py
> collected 561 items / 44 deselected / 517 selected
> 
> src/toil/test/__init__.py::toil.test.make_tests PASSED                   [  0%]
> src/toil/test/__init__.py::toil.test.timeLimit PASSED                    [  0%]
> src/toil/test/batchSystems/test_lsf_helper.py::LSFHelperTest::test_parse_mem_and_cmd_from_output PASSED [  0%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_many_all_exist PASSED [  0%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_one_exists PASSED [  0%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_one_not_exists PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_sacct_raises_job_exists PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_sacct_raises_job_not_exists PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_some_exists PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_many_all_exist PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_many_none_exist PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_many_some_exist PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_one_exists PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_one_not_exists PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_many_all_exist PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_many_none_exist PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_many_some_exist PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_one_exists PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_one_not_exists PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_job_exists PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_job_not_exists PASSED [  4%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_sacct_raises_job_exists PASSED [  4%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_sacct_raises_job_not_exists PASSED [  4%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testBatchCreate PASSED [  4%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testChildLoadingEquality PASSED [  4%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testCleanCache SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testConfigEquality PASSED [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testDestructionIdempotence PASSED [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testDestructionOfCorruptedJobStore SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testEmptyFileStoreIDIsReadable PASSED [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testFileDeletion SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testGrowingAndShrinkingJob PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testImportHttpFile PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testInitialState PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testJobCreation PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testJobDeletions PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testJobLoadEquality PASSED [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testLargeFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testMultipartUploads SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPartialReadFromStream PASSED [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPerJobFiles PASSED [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPersistantFilesToDelete PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPreserveFileName PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testReadWriteFileStreamTextMode PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testReadWriteSharedFilesTextMode PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testSharedFiles PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testStatsAndLogging PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testUpdateBehavior PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testWriteLogFiles PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testZeroLengthFiles PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_jobstore_does_not_leak_symlinks PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_jobstore_init_preserves_symlink_path PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py PASSED [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py PASSED [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest <- src/toil/test/__init__.py PASSED [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testBatchCreate SKIPPED (Install Toil with the 'google' extra to include this test.) [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testChildLoadingEquality SKIPPED (Install Toil with the 'google' extra to include this test.) [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testCleanCache SKIPPED (Install Toil with the 'google' extra to include this test.) [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testConfigEquality SKIPPED (Install Toil with the 'google' extra to include this test.) [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testDestructionIdempotence SKIPPED (Install Toil with the 'google' extra to include this test.) [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testDestructionOfCorruptedJobStore SKIPPED (Install Toil with the 'google' extra to include this test.) [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testEmptyFileStoreIDIsReadable SKIPPED (Install Toil with the 'google' extra to include this test.) [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testFileDeletion SKIPPED (Install Toil with the 'google' extra to include this test.) [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testGrowingAndShrinkingJob SKIPPED (Install Toil with the 'google' extra to include this test.) [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testImportHttpFile SKIPPED (Install Toil with the 'google' extra to include this test.) [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testInitialState SKIPPED (Install Toil with the 'google' extra to include this test.) [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testJobCreation SKIPPED (Install Toil with the 'google' extra to include this test.) [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testJobDeletions SKIPPED (Install Toil with the 'google' extra to include this test.) [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testJobLoadEquality SKIPPED (Install Toil with the 'google' extra to include this test.) [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testLargeFile SKIPPED (Install Toil with the 'google' extra to include this test.) [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testMultipartUploads SKIPPED (Install Toil with the 'google' extra to include this test.) [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testPartialReadFromStream SKIPPED (Install Toil with the 'google' extra to include this test.) [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testPerJobFiles SKIPPED (Install Toil with the 'google' extra to include this test.) [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testPersistantFilesToDelete SKIPPED (Install Toil with the 'google' extra to include this test.) [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testReadWriteFileStreamTextMode SKIPPED (Install Toil with the 'google' extra to include this test.) [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testReadWriteSharedFilesTextMode SKIPPED (Install Toil with the 'google' extra to include this test.) [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testSharedFiles SKIPPED (Install Toil with the 'google' extra to include this test.) [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testStatsAndLogging SKIPPED (Install Toil with the 'google' extra to include this test.) [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testUpdateBehavior SKIPPED (Install Toil with the 'google' extra to include this test.) [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testWriteLogFiles SKIPPED (Install Toil with the 'google' extra to include this test.) [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testZeroLengthFiles SKIPPED (Install Toil with the 'google' extra to include this test.) [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest <- src/toil/test/__init__.py SKIPPED (Install Toil with the 'google' extra to include this test.) [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testBatchCreate SKIPPED (Configure AWS credentials to include this test.) [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testChildLoadingEquality SKIPPED (Configure AWS credentials to include this test.) [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testCleanCache SKIPPED (Configure AWS credentials to include this test.) [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testConfigEquality SKIPPED (Configure AWS credentials to include this test.) [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testDestructionIdempotence SKIPPED (Configure AWS credentials to include this test.) [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testDestructionOfCorruptedJobStore SKIPPED (Configure AWS credentials to include this test.) [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testEmptyFileStoreIDIsReadable SKIPPED (Configure AWS credentials to include this test.) [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testFileDeletion SKIPPED (Configure AWS credentials to include this test.) [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testGrowingAndShrinkingJob SKIPPED (Configure AWS credentials to include this test.) [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testImportHttpFile SKIPPED (Configure AWS credentials to include this test.) [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testInitialState SKIPPED (Configure AWS credentials to include this test.) [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testInlinedFiles SKIPPED (Configure AWS credentials to include this test.) [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testJobCreation SKIPPED (Configure AWS credentials to include this test.) [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testJobDeletions SKIPPED (Configure AWS credentials to include this test.) [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testJobLoadEquality SKIPPED (Configure AWS credentials to include this test.) [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testLargeFile SKIPPED (Configure AWS credentials to include this test.) [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testMultiThreadImportFile SKIPPED (Configure AWS credentials to include this test.) [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testMultipartUploads SKIPPED (Configure AWS credentials to include this test.) [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testOverlargeJob SKIPPED (Configure AWS credentials to include this test.) [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testPartialReadFromStream SKIPPED (Configure AWS credentials to include this test.) [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testPerJobFiles SKIPPED (Configure AWS credentials to include this test.) [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testPersistantFilesToDelete SKIPPED (Configure AWS credentials to include this test.) [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testReadWriteFileStreamTextMode SKIPPED (Configure AWS credentials to include this test.) [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testReadWriteSharedFilesTextMode SKIPPED (Configure AWS credentials to include this test.) [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testSDBDomainsDeletedOnFailedJobstoreBucketCreation SKIPPED (Configure AWS credentials to include this test.) [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testSharedFiles SKIPPED (Configure AWS credentials to include this test.) [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testStatsAndLogging SKIPPED (Configure AWS credentials to include this test.) [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testUpdateBehavior SKIPPED (Configure AWS credentials to include this test.) [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testWriteLogFiles SKIPPED (Configure AWS credentials to include this test.) [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testZeroLengthFiles SKIPPED (Configure AWS credentials to include this test.) [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::InvalidAWSJobStoreTest::testInvalidJobStoreName SKIPPED (Configure AWS credentials to include this test.) [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testBatchCreate SKIPPED (Configure AWS credentials to include this test.) [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testChildLoadingEquality SKIPPED (Configure AWS credentials to include this test.) [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testCleanCache SKIPPED (Configure AWS credentials to include this test.) [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testConfigEquality SKIPPED (Configure AWS credentials to include this test.) [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testDestructionIdempotence SKIPPED (Configure AWS credentials to include this test.) [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testDestructionOfCorruptedJobStore SKIPPED (Configure AWS credentials to include this test.) [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testEmptyFileStoreIDIsReadable SKIPPED (Configure AWS credentials to include this test.) [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testEncrypted SKIPPED (Configure AWS credentials to include this test.) [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testFileDeletion SKIPPED (Configure AWS credentials to include this test.) [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testGrowingAndShrinkingJob SKIPPED (Configure AWS credentials to include this test.) [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testImportHttpFile SKIPPED (Configure AWS credentials to include this test.) [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testInitialState SKIPPED (Configure AWS credentials to include this test.) [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testInlinedFiles SKIPPED (Configure AWS credentials to include this test.) [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testJobCreation SKIPPED (Configure AWS credentials to include this test.) [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testJobDeletions SKIPPED (Configure AWS credentials to include this test.) [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testJobLoadEquality SKIPPED (Configure AWS credentials to include this test.) [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testLargeFile SKIPPED (Configure AWS credentials to include this test.) [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testMultiThreadImportFile SKIPPED (Configure AWS credentials to include this test.) [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testMultipartUploads SKIPPED (Configure AWS credentials to include this test.) [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testOverlargeJob SKIPPED (Configure AWS credentials to include this test.) [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testPartialReadFromStream SKIPPED (Configure AWS credentials to include this test.) [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testPerJobFiles SKIPPED (Configure AWS credentials to include this test.) [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testPersistantFilesToDelete SKIPPED (Configure AWS credentials to include this test.) [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testReadWriteFileStreamTextMode SKIPPED (Configure AWS credentials to include this test.) [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testReadWriteSharedFilesTextMode SKIPPED (Configure AWS credentials to include this test.) [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testSDBDomainsDeletedOnFailedJobstoreBucketCreation SKIPPED (Configure AWS credentials to include this test.) [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testSharedFiles SKIPPED (Configure AWS credentials to include this test.) [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testStatsAndLogging SKIPPED (Configure AWS credentials to include this test.) [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testUpdateBehavior SKIPPED (Configure AWS credentials to include this test.) [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testWriteLogFiles SKIPPED (Configure AWS credentials to include this test.) [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testZeroLengthFiles SKIPPED (Configure AWS credentials to include this test.) [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest <- src/toil/test/__init__.py SKIPPED (Configure AWS credentials to include this test.) [ 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean SKIPPED (Skipping docker test.) [ 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_FORGO SKIPPED (Skipping docker test.) [ 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_None SKIPPED (Skipping docker test.) [ 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_RM SKIPPED (Skipping docker test.) [ 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_STOP SKIPPED (Skipping docker test.) [ 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_FORGO SKIPPED (Skipping docker test.) [ 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_None SKIPPED (Skipping docker test.) [ 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_RM SKIPPED (Skipping docker test.) [ 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_STOP SKIPPED (Skipping docker test.) [ 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_FORGO SKIPPED (Skipping docker test.) [ 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_None SKIPPED (Skipping docker test.) [ 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_RM SKIPPED (Skipping docker test.) [ 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_STOP SKIPPED (Skipping docker test.) [ 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_FORGO SKIPPED (Skipping docker test.) [ 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_None SKIPPED (Skipping docker test.) [ 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_RM SKIPPED (Skipping docker test.) [ 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_STOP SKIPPED (Skipping docker test.) [ 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_FORGO SKIPPED (Skipping docker test.) [ 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_None SKIPPED (Skipping docker test.) [ 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_RM SKIPPED (Skipping docker test.) [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_STOP SKIPPED (Skipping docker test.) [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_FORGO SKIPPED (Skipping docker test.) [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_None SKIPPED (Skipping docker test.) [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_RM SKIPPED (Skipping docker test.) [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_STOP SKIPPED (Skipping docker test.) [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs SKIPPED (Skipping docker test.) [ 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs_Demux SKIPPED (Skipping docker test.) [ 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs_Demux_Stream SKIPPED (Skipping docker test.) [ 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs_Stream SKIPPED (Skipping docker test.) [ 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerPipeChain SKIPPED (Skipping docker test.) [ 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerPipeChainErrorDetection SKIPPED (Skipping docker test.) [ 43%]
> src/toil/test/lib/dockerTest.py::DockerTest::testNonCachingDockerChain SKIPPED (Skipping docker test.) [ 43%]
> src/toil/test/lib/dockerTest.py::DockerTest::testNonCachingDockerChainErrorDetection SKIPPED (Skipping docker test.) [ 43%]
> src/toil/test/lib/test_conversions.py::ConversionTest::test_convert PASSED [ 43%]
> src/toil/test/lib/test_conversions.py::ConversionTest::test_hms_duration_to_seconds PASSED [ 43%]
> src/toil/test/lib/test_conversions.py::ConversionTest::test_human2bytes PASSED [ 44%]
> src/toil/test/mesos/MesosDataStructuresTest.py::DataStructuresTest::testJobQueue PASSED [ 44%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testAddingInitialNode PASSED [ 44%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testHighTargetTime PASSED [ 44%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testJobTooLargeForAllNodes PASSED [ 44%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testLongRunningJobs PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testLowTargetTime PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testPackingOneShape PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testPathologicalCase PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testSorting PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testZeroResourceJobs PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testBetaInertia PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testMaxNodes PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testMinNodes PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testNoLaunchingIfDeltaAlreadyMet PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testPreemptableDeficitIsSet PASSED [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testPreemptableDeficitResponse PASSED [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testRounding PASSED [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ScalerThreadTest::testClusterScaling SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ScalerThreadTest::testClusterScalingMultipleNodeTypes SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ScalerThreadTest::testClusterScalingWithPreemptableJobs SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 47%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTest::testAutoScale SKIPPED (Install Toil with the 'google' extra to include this test.) [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTest::testSpotAutoScale SKIPPED (Install Toil with the 'google' extra to include this test.) [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEStaticAutoscaleTest::testAutoScale SKIPPED (Install Toil with the 'google' extra to include this test.) [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEStaticAutoscaleTest::testSpotAutoScale SKIPPED (Install Toil with the 'google' extra to include this test.) [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTestMultipleNodeTypes::testAutoScale SKIPPED (Install Toil with the 'google' extra to include this test.) [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCERestartTest::testAutoScaledCluster SKIPPED (Install Toil with the 'google' extra to include this test.) [ 49%]
> src/toil/test/provisioners/provisionerTest.py::ProvisionerTest::test_node_type_parsing PASSED [ 49%]
> src/toil/test/server/serverTest.py::ToilWESServerTest::test_get_service_info SKIPPED (Install Toil with the 'server' extra to include this test.) [ 49%]
> src/toil/test/server/serverTest.py::ToilWESServerTest::test_run_example_cwl_workflow SKIPPED (Install Toil with the 'server' extra to include this test.) [ 49%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testDeferralWithConcurrentEncapsulation SKIPPED (Install Mesos (and Toil with the 'mesos' extra) to include this test.) [ 49%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testDeferralWithFailureAndEncapsulation SKIPPED (Install Mesos (and Toil with the 'mesos' extra) to include this test.) [ 50%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testRestart SKIPPED (Install Mesos (and Toil with the 'mesos' extra) to include this test.) [ 50%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testSplitRootPackages SKIPPED (Install Mesos (and Toil with the 'mesos' extra) to include this test.) [ 50%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testUserTypesInJobFunctionArgs SKIPPED (Install Mesos (and Toil with the 'mesos' extra) to include this test.) [ 50%]
> src/toil/test/src/checkpointTest.py::CheckpointTest::testCheckpointNotRetried PASSED [ 50%]
> src/toil/test/src/checkpointTest.py::CheckpointTest::testCheckpointRetriedOnce SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 51%]
> src/toil/test/src/checkpointTest.py::CheckpointTest::testCheckpointedRestartSucceeds SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 51%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testBatchSystemCleanupCanHandleWorkerDeaths PASSED [ 51%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testDeferredFunctionRunsWithClassMethod PASSED [ 51%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testDeferredFunctionRunsWithFailures SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 51%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testDeferredFunctionRunsWithLambda PASSED [ 52%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testDeferredFunctionRunsWithMethod PASSED [ 52%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testNewJobsCanHandleOtherJobDeaths SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 52%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testApplianceParser SKIPPED (Skipping docker test.) [ 52%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadGoogleRepo SKIPPED (Skipping docker test.) [ 52%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadQuayRepo SKIPPED (Skipping docker test.) [ 52%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadQuayRepoNTag SKIPPED (Skipping docker test.) [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadQuayTag SKIPPED (Skipping docker test.) [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBroadDockerRepo SKIPPED (Skipping docker test.) [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBroadDockerRepoBadTag SKIPPED (Skipping docker test.) [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testGoogleRepo SKIPPED (Skipping docker test.) [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testNonexistentRepo SKIPPED (Skipping docker test.) [ 54%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testOfficialUbuntuRepo SKIPPED (Skipping docker test.) [ 54%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testToilQuayRepo SKIPPED (Skipping docker test.) [ 54%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testFileStoreLogging SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 54%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testFileStoreOperations SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 54%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testImportReadFileCompatibility PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testReadWriteFileStreamTextMode PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testToilIsNotBroken PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testWriteExportFileCompatibility PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testWriteReadGlobalFilePermissions PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testAsyncWriteWithCaching SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testCacheEvictionFailCase SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testCacheEvictionPartialEvict SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testCacheEvictionTotalEvict SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testControlledFailedWorkerRetry SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testDeleteLocalFile PASSED [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testExtremeCacheSetup SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testFileStoreExportFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testFileStoreLogging SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testFileStoreOperations SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testImportReadFileCompatibility PASSED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testMultipleJobsReadSameCacheHitGlobalFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testMultipleJobsReadSameCacheMissGlobalFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadCachHitFileFromJobStore PASSED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadCacheMissFileFromJobStoreWithCachingReadFile PASSED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadCacheMissFileFromJobStoreWithoutCachingReadFile PASSED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadWriteFileStreamTextMode PASSED [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testRemoveLocalImmutablyReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testRemoveLocalMutablyReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReturnFileSizes SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReturnFileSizesWithBadWorker SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testSimultaneousReadsUncachedStream PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testToilIsNotBroken PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteExportFileCompatibility PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteLocalFileToJobStore PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteNonLocalFileToJobStore PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteReadGlobalFilePermissions PASSED [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testFileStoreLogging SKIPPED (Set TOIL_AWS_KEYNAME to an AWS-stored SSH key to include this test.) [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testFileStoreOperations SKIPPED (Set TOIL_AWS_KEYNAME to an AWS-stored SSH key to include this test.) [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testImportReadFileCompatibility SKIPPED (Set TOIL_AWS_KEYNAME to an AWS-stored SSH key to include this test.) [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testReadWriteFileStreamTextMode SKIPPED (Set TOIL_AWS_KEYNAME to an AWS-stored SSH key to include this test.) [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testToilIsNotBroken SKIPPED (Set TOIL_AWS_KEYNAME to an AWS-stored SSH key to include this test.) [ 62%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testWriteExportFileCompatibility SKIPPED (Set TOIL_AWS_KEYNAME to an AWS-stored SSH key to include this test.) [ 62%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testWriteReadGlobalFilePermissions SKIPPED (Set TOIL_AWS_KEYNAME to an AWS-stored SSH key to include this test.) [ 62%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testAsyncWriteWithCaching SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 62%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testCacheEvictionFailCase SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 62%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testCacheEvictionPartialEvict SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testCacheEvictionTotalEvict SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testControlledFailedWorkerRetry SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testDeleteLocalFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testExtremeCacheSetup SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testFileStoreExportFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testFileStoreLogging SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testFileStoreOperations SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testImportReadFileCompatibility SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testMultipleJobsReadSameCacheHitGlobalFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testMultipleJobsReadSameCacheMissGlobalFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadCachHitFileFromJobStore SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadCacheMissFileFromJobStoreWithCachingReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadCacheMissFileFromJobStoreWithoutCachingReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadWriteFileStreamTextMode SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testRemoveLocalImmutablyReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testRemoveLocalMutablyReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReturnFileSizes SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReturnFileSizesWithBadWorker SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testSimultaneousReadsUncachedStream SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testToilIsNotBroken SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteExportFileCompatibility SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 67%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteLocalFileToJobStore SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 67%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteNonLocalFileToJobStore SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 67%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteReadGlobalFilePermissions SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 67%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testFileStoreLogging SKIPPED (Install Toil with the 'google' extra to include this test.) [ 67%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testFileStoreOperations SKIPPED (Install Toil with the 'google' extra to include this test.) [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testImportReadFileCompatibility SKIPPED (Install Toil with the 'google' extra to include this test.) [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testReadWriteFileStreamTextMode SKIPPED (Install Toil with the 'google' extra to include this test.) [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testToilIsNotBroken SKIPPED (Install Toil with the 'google' extra to include this test.) [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testWriteExportFileCompatibility SKIPPED (Install Toil with the 'google' extra to include this test.) [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testWriteReadGlobalFilePermissions SKIPPED (Install Toil with the 'google' extra to include this test.) [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testAsyncWriteWithCaching SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testCacheEvictionFailCase SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testCacheEvictionPartialEvict SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testCacheEvictionTotalEvict SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testControlledFailedWorkerRetry SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testDeleteLocalFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testExtremeCacheSetup SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testFileStoreExportFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testFileStoreLogging SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testFileStoreOperations SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testImportReadFileCompatibility SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testMultipleJobsReadSameCacheHitGlobalFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testMultipleJobsReadSameCacheMissGlobalFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadCachHitFileFromJobStore SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadCacheMissFileFromJobStoreWithCachingReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadCacheMissFileFromJobStoreWithoutCachingReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadWriteFileStreamTextMode SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testRemoveLocalImmutablyReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testRemoveLocalMutablyReadFile SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReturnFileSizes SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReturnFileSizesWithBadWorker SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testSimultaneousReadsUncachedStream SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testToilIsNotBroken SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteExportFileCompatibility SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteLocalFileToJobStore SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteNonLocalFileToJobStore SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 74%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteReadGlobalFilePermissions SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 74%]
> src/toil/test/src/helloWorldTest.py::HelloWorldTest::testHelloWorld PASSED [ 74%]
> src/toil/test/src/importExportFileTest.py::ImportExportFileTest::test_basic_import_export PASSED [ 74%]
> src/toil/test/src/importExportFileTest.py::ImportExportFileTest::test_import_export_restart_false PASSED [ 74%]
> src/toil/test/src/importExportFileTest.py::ImportExportFileTest::test_import_export_restart_true SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 75%]
> src/toil/test/src/jobDescriptionTest.py::JobDescriptionTest::testJobDescription PASSED [ 75%]
> src/toil/test/src/jobDescriptionTest.py::JobDescriptionTest::testJobDescriptionSequencing PASSED [ 75%]
> src/toil/test/src/jobEncapsulationTest.py::JobEncapsulationTest::testAddChildEncapsulate PASSED [ 75%]
> src/toil/test/src/jobEncapsulationTest.py::JobEncapsulationTest::testEncapsulation PASSED [ 75%]
> src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testCachingFileStore PASSED [ 76%]
> src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testJobFileStore PASSED [ 76%]
> src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testJobFileStoreWithBadWorker SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 76%]
> src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testNonCachingFileStore PASSED [ 76%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testService SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 76%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceDeadlock SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 76%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceParallelRecursive SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 77%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceRecursive SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 77%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceSerialization SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 77%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceWithCheckpoints SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 77%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testService SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 77%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceDeadlock SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 78%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceParallelRecursive SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 78%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceRecursive SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 78%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceSerialization SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 78%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceWithCheckpoints SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 78%]
> src/toil/test/src/jobTest.py::JobTest::testDAGConsistency PASSED         [ 79%]
> src/toil/test/src/jobTest.py::JobTest::testDeadlockDetection PASSED      [ 79%]
> src/toil/test/src/jobTest.py::JobTest::testEvaluatingRandomDAG SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 79%]
> src/toil/test/src/jobTest.py::JobTest::testNewCheckpointIsLeafVertexNonRootCase SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 79%]
> src/toil/test/src/jobTest.py::JobTest::testNewCheckpointIsLeafVertexRootCase SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 79%]
> src/toil/test/src/jobTest.py::JobTest::testSiblingDAGConsistency SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 80%]
> src/toil/test/src/jobTest.py::JobTest::testStatic SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 80%]
> src/toil/test/src/jobTest.py::JobTest::testStatic2 PASSED                [ 80%]
> src/toil/test/src/jobTest.py::JobTest::testTrivialDAGConsistency SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 80%]
> src/toil/test/src/miscTests.py::MiscTests::testGetSizeOfDirectoryWorks SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 80%]
> src/toil/test/src/miscTests.py::MiscTests::testIDStability PASSED        [ 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_atomic_context_error PASSED [ 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_atomic_context_ok PASSED [ 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_atomic_install PASSED    [ 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_atomic_install_dev PASSED [ 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_call_command_err PASSED  [ 82%]
> src/toil/test/src/miscTests.py::MiscTests::test_call_command_ok PASSED   [ 82%]
> src/toil/test/src/miscTests.py::TestPanic::test_nested_panic PASSED      [ 82%]
> src/toil/test/src/miscTests.py::TestPanic::test_panic PASSED             [ 82%]
> src/toil/test/src/miscTests.py::TestPanic::test_panic_by_hand PASSED     [ 82%]
> src/toil/test/src/miscTests.py::TestPanic::test_panic_with_secondary PASSED [ 82%]
> src/toil/test/src/promisesTest.py::CachedUnpicklingJobStoreTest::test PASSED [ 83%]
> src/toil/test/src/promisesTest.py::ChainedIndexedPromisesTest::test PASSED [ 83%]
> src/toil/test/src/promisesTest.py::PathIndexingPromiseTest::test PASSED  [ 83%]
> src/toil/test/src/realtimeLoggerTest.py::RealtimeLoggerTest::testRealtimeLogger PASSED [ 83%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testLogToMaster SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 83%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testMultipleLogToMaster SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 84%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testRegularLog PASSED [ 84%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testWriteGzipLogs SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 84%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testWriteLogs PASSED [ 84%]
> src/toil/test/src/resourceTest.py::ResourceTest::testBuiltIn PASSED      [ 84%]
> src/toil/test/src/resourceTest.py::ResourceTest::testNonPyStandAlone PASSED [ 85%]
> src/toil/test/src/resourceTest.py::ResourceTest::testPackage PASSED      [ 85%]
> src/toil/test/src/resourceTest.py::ResourceTest::testStandAlone PASSED   [ 85%]
> src/toil/test/src/resourceTest.py::ResourceTest::testStandAloneInPackage PASSED [ 85%]
> src/toil/test/src/restartDAGTest.py::RestartDAGTest::testRestartedWorkflowSchedulesCorrectJobsOnFailedParent SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 85%]
> src/toil/test/src/restartDAGTest.py::RestartDAGTest::testRestartedWorkflowSchedulesCorrectJobsOnKilledParent SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 86%]
> src/toil/test/src/resumabilityTest.py::ResumabilityTest::test SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 86%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testAlways PASSED [ 86%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testNever PASSED [ 86%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testOnErrorWithError PASSED [ 86%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testOnErrorWithNoError PASSED [ 87%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testOnSuccessWithError PASSED [ 87%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testOnSuccessWithSuccess PASSED [ 87%]
> src/toil/test/src/systemTest.py::SystemTest::testAtomicityOfNonEmptyDirectoryRenames PASSED [ 87%]
> src/toil/test/src/threadingTest.py::ThreadingTest::testGlobalMutexOrdering PASSED [ 87%]
> src/toil/test/src/threadingTest.py::ThreadingTest::testLastProcessStanding PASSED [ 88%]
> src/toil/test/src/toilContextManagerTest.py::ToilContextManagerTest::testContextManger SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 88%]
> src/toil/test/src/toilContextManagerTest.py::ToilContextManagerTest::testExportAfterFailedExport SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 88%]
> src/toil/test/src/toilContextManagerTest.py::ToilContextManagerTest::testNoContextManger SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 88%]
> src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobClass SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 88%]
> src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobClassFromMain PASSED [ 88%]
> src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobFunction PASSED [ 89%]
> src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobFunctionFromMain PASSED [ 89%]
> src/toil/test/src/workerTest.py::WorkerTests::testNextChainable PASSED   [ 89%]
> src/toil/test/utils/toilDebugTest.py::ToilDebugFileTest::testFetchJobStoreFiles PASSED [ 89%]
> src/toil/test/utils/toilDebugTest.py::ToilDebugFileTest::testFetchJobStoreFilesWSymlinks PASSED [ 89%]
> src/toil/test/utils/toilDebugTest.py::ToilDebugFileTest::testJobStoreContents SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 90%]
> src/toil/test/utils/toilKillTest.py::ToilKillTest::test_cwl_toil_kill FAILED [ 90%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testAWSProvisionerUtils SKIPPED (Set TOIL_AWS_KEYNAME to an AWS-stored SSH key to include this test.) [ 90%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testGetPIDStatus PASSED     [ 90%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusFailedCWLWF SKIPPED (Skipping docker test.) [ 90%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusFailedToilWF PASSED [ 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusSuccessfulCWLWF SKIPPED (Skipping docker test.) [ 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testMultipleJobsPerWorkerStats SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testPrintJobLog FAILED      [ 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testRestartAttribute PASSED [ 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testUnicodeSupport PASSED   [ 92%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testUtilsSort SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 92%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testUtilsStatsSort SKIPPED (Skipped because TOIL_TEST_QUICK is "True") [ 92%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Ceil PASSED [ 92%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Cross PASSED [ 92%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Floor PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Length PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadBoolean PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadFloat PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadInt PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadJson PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadLines PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadMap PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadString PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadTsv PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Sub PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Transpose PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_WriteJson PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_WriteLines PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_WriteMap PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_WriteTsv PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Zip PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlLanguageSpecWorkflowsTest::test_type_pair PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlLanguageSpecWorkflowsTest::test_v1_declaration PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_as_map PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_as_pairs PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_ceil PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_collect_by_key PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_cross PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_flatten PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_floor PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_keys PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_length PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_range PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_read PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_round PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_size PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_stdout PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_sub PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_transpose PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_write PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_zip PASSED [100%]
> 
> =================================== FAILURES ===================================
> _______________________ ToilKillTest.test_cwl_toil_kill ________________________
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/src/toil/test/utils/toilKillTest.py", line 55, in test_cwl_toil_kill
>     assert cwl_process.poll()==None
> AssertionError
> ---------------------------- Captured stdout setup -----------------------------
> 
> 
> [TEST] toil.test.utils.toilKillTest.ToilKillTest:test_cwl_toil_kill (Dec 20 2022 10:29:27:684686 PST)
> 
> 
> ----------------------------- Captured stderr call -----------------------------
> You are using cwltool version 3.1.20221109155812, which might not be compatible with version 3.1.20220119140128 used by Toil. You should consider running 'pip install cwltool==3.1.20220119140128' to match Toil's cwltool version.
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin/toil-cwl-runner", line 33, in <module>
>     sys.exit(load_entry_point('toil', 'console_scripts', 'toil-cwl-runner')())
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin/toil-cwl-runner", line 25, in importlib_load_entry_point
>     return next(matches).load()
>   File "/usr/lib/python3.10/importlib/metadata/__init__.py", line 171, in load
>     module = import_module(match.group('module'))
>   File "/usr/lib/python3.10/importlib/__init__.py", line 126, in import_module
>     return _bootstrap._gcd_import(name[level:], package, level)
>   File "<frozen importlib._bootstrap>", line 1050, in _gcd_import
>   File "<frozen importlib._bootstrap>", line 1027, in _find_and_load
>   File "<frozen importlib._bootstrap>", line 1006, in _find_and_load_unlocked
>   File "<frozen importlib._bootstrap>", line 688, in _load_unlocked
>   File "<frozen importlib._bootstrap_external>", line 883, in exec_module
>   File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
>   File "/<<PKGBUILDDIR>>/src/toil/cwl/cwltoil.py", line 61, in <module>
>     import cwltool.expression
> ModuleNotFoundError: No module named 'cwltool.expression'
> __________________________ UtilsTest.testPrintJobLog ___________________________
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/src/toil/test/utils/utilsTest.py", line 352, in testPrintJobLog
>     status = ToilStatus(self.toilDir)
>   File "/<<PKGBUILDDIR>>/src/toil/utils/toilStatus.py", line 35, in __init__
>     self.jobStore = Toil.resumeJobStore(jobStoreName)
>   File "/<<PKGBUILDDIR>>/src/toil/common.py", line 1042, in resumeJobStore
>     jobStore.resume()
>   File "/<<PKGBUILDDIR>>/src/toil/jobStores/fileJobStore.py", line 116, in resume
>     raise NoSuchJobStoreException(self.jobStoreDir)
> toil.jobStores.abstractJobStore.NoSuchJobStoreException: The job store '/tmp/toil-test-utils.utilsTest.UtilsTest-testPrintJobLog-i9aoeagl/jobstore' does not exist, so there is nothing to restart.
> ---------------------------- Captured stdout setup -----------------------------
> 
> 
> [TEST] toil.test.utils.utilsTest.UtilsTest:testPrintJobLog (Dec 20 2022 10:29:44:580260 PST)
> 
> 
> ----------------------------- Captured stderr call -----------------------------
> You are using cwltool version 3.1.20221109155812, which might not be compatible with version 3.1.20220119140128 used by Toil. You should consider running 'pip install cwltool==3.1.20220119140128' to match Toil's cwltool version.
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin/toil-cwl-runner", line 33, in <module>
>     sys.exit(load_entry_point('toil', 'console_scripts', 'toil-cwl-runner')())
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin/toil-cwl-runner", line 25, in importlib_load_entry_point
>     return next(matches).load()
>   File "/usr/lib/python3.10/importlib/metadata/__init__.py", line 171, in load
>     module = import_module(match.group('module'))
>   File "/usr/lib/python3.10/importlib/__init__.py", line 126, in import_module
>     return _bootstrap._gcd_import(name[level:], package, level)
>   File "<frozen importlib._bootstrap>", line 1050, in _gcd_import
>   File "<frozen importlib._bootstrap>", line 1027, in _find_and_load
>   File "<frozen importlib._bootstrap>", line 1006, in _find_and_load_unlocked
>   File "<frozen importlib._bootstrap>", line 688, in _load_unlocked
>   File "<frozen importlib._bootstrap_external>", line 883, in exec_module
>   File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
>   File "/<<PKGBUILDDIR>>/src/toil/cwl/cwltoil.py", line 61, in <module>
>     import cwltool.expression
> ModuleNotFoundError: No module named 'cwltool.expression'
> ------------------------------ Captured log call -------------------------------
> INFO     toil.test:__init__.py:109 Setting up toil.test.utils.utilsTest.UtilsTest.testPrintJobLog ...
> INFO     toil.test:__init__.py:114 Tore down toil.test.utils.utilsTest.UtilsTest.testPrintJobLog
> =========================== short test summary info ============================
> FAILED src/toil/test/utils/toilKillTest.py::ToilKillTest::test_cwl_toil_kill
> FAILED src/toil/test/utils/utilsTest.py::UtilsTest::testPrintJobLog - toil.jo...
> ==== 2 failed, 196 passed, 319 skipped, 44 deselected in 1303.61s (0:21:43) ====
> E: pybuild pybuild:386: test: plugin custom failed with: exit code=1: HOME=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil python3.10 setup.py develop --user && PYTHONPATH=/<<PKGBUILDDIR>>/src:$PYTHONPATH PATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin/:$PATH TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True python3.10 -m pytest -vv -W ignore --ignore src/toil/test/lib/aws/test_s3.py --ignore src/toil/test/provisioners/aws/awsProvisionerTest.py --ignore src/toil/test/wdl/toilwdlTest.py --ignore src/toil/test/cwl/cwlTest.py --ignore src/toil/test/src/promisedRequirementTest.py --ignore src/toil/test/lib/test_ec2.py --ignore src/toil/test/batchSystems/batchSystemTest.py -k "not (test_bioconda or test_run_conformance or testImportFtpFile or ToilWdlIntegrationTest or SortTest or testCwlexample or testVirtualEnv or ToilDocumentationTest)" /<<PKGBUILDDIR>>/src/toil/test
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.11 3.10" returned exit code 13

The full build log is available from:
http://qa-logs.debian.net/2022/12/20/toil_5.6.0-7_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20221220;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20221220&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.