[Debian-med-packaging] Bug#1027335: pairtools -- FTBFS in unstable

[Nilesh Patra]

Source: pairtools
Version: 0.3.0-3.2
Severity: serious

Pairtools FTBFS with pysam related error. Looks like
something is off.

dh_auto_clean
I: pybuild base:240: python3.11 setup.py clean 
Traceback (most recent call last):                                                                                                                                                                                
  File "/<<PKGBUILDDIR>>/setup.py", line 130, in <module>
    ext_modules=get_ext_modules(),
                ^^^^^^^^^^^^^^^^^
  File "/<<PKGBUILDDIR>>/setup.py", line 81, in get_ext_modules
    extra_link_args=pysam.get_libraries(),
                    ^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/pysam/__init__.py", line 100, in get_libraries
    return [os.path.join(dirname, x + so) for x in pysam_libs]
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/pysam/__init__.py", line 100, in <listcomp>
    return [os.path.join(dirname, x + so) for x in pysam_libs]
                                  ~~^~~~
TypeError: can only concatenate str (not "NoneType") to str

Thanks,
Nilesh

-- System Information:
Debian Release: bookworm/sid
  APT prefers testing
  APT policy: (990, 'testing')
Architecture: amd64 (x86_64)

Kernel: Linux 6.0.0-6-amd64 (SMP w/8 CPU threads; PREEMPT)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled