[Debian-med-packaging] Bug#1006376: blasr: autopkgtest regression: Segmentation fault

[Paul Gevers]

Source: blasr
Version: 5.3.5+dfsg-2
X-Debbugs-CC: debian-ci at lists.debian.org
Severity: serious
User: debian-ci at lists.debian.org
Usertags: regression

Dear maintainer(s),

With a recent upload of blasr the autopkgtest of blasr fails in testing 
when that autopkgtest is run with the binary packages of blasr from 
unstable. It passes when run with only packages from testing. In tabular 
form:

                        pass            fail
blasr                  from testing    5.3.5+dfsg-2
all others             from testing    from testing

I copied some of the output at the bottom of this report.

Currently this regression is blocking the migration to testing [1]. Can 
you please investigate the situation and fix it?

More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=blasr

https://ci.debian.net/data/autopkgtest/testing/amd64/b/blasr/19529822/log.gz

[INFO] 2022-02-24T10:13:15 [blasr] started.
/tmp/autopkgtest-lxc.wkwsu473/downtmp/build.ehO/src/debian/tests/run-unit-test: 
line 16:  1681 Segmentation fault      blasr query.fasta ref.fa --sam 
--out alignment.sam
autopkgtest [10:13:15]: test run-unit-test

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