[Debian-med-packaging] Bug#1016160: ITP: unifrac-tools -- high-performance phylogenetic diversity calculations (binaries)
Andreas Tille
tille at debian.org
Thu Jul 28 09:43:44 BST 2022
Package: wnpp
Severity: wishlist
Subject: ITP: unifrac-tools -- high-performance phylogenetic diversity calculations (binaries)
Package: wnpp
Owner: Andreas Tille <tille at debian.org>
Severity: wishlist
* Package name : unifrac-tools
Version : 1.1.1
Upstream Author : UniFrac development team.
* URL : https://github.com/biocore/unifrac-tools
* License : BSD-3-Clause
Programming Lang: C
Description : high-performance phylogenetic diversity calculations (binaries)
The de facto repository for high-performance phylogenetic diversity
calculations. The methods in this repository are based on an
implementation of the Strided State UniFrac algorithm which is faster,
and uses less memory than Fast UniFrac. Strided State UniFrac supports
Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance
Adjusted UniFrac and meta UniFrac. This repository also includes Stacked
Faith (manuscript in preparation), a method for calculating Faith's PD
that is faster and uses less memory than the Fast UniFrac-based
reference implementation.
.
This package contains target binaries ssu and faithpd
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/unifrac-tools
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