[Debian-med-packaging] Bug#1016454: megadepth: autopkgtest failure on s390x: segmentation fault

[Paul Gevers]

Source: megadepth
Version: 1.2.0-3
Severity: serious
User: debian-ci at lists.debian.org
Usertags: fails-always

Dear maintainer(s),

You recently added an autopkgtest to your package megadepth, great. 
However, it fails on s390x. Currently this failure is blocking the 
migration to testing [1]. Can you please investigate the situation and 
fix it?

I copied some of the output at the bottom of this report.

More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=megadepth

https://ci.debian.net/data/autopkgtest/testing/s390x/m/megadepth/23583699/log.gz

Running Tests
Test 1
building whole annotation region map done
2 chromosomes for annotated regions read
0 chromosomes for annotated regions read, collapsed
total number of annotations in collapsed: 0
Processing BAM: "tests/test_noprefix.bam"
/tmp/autopkgtest-lxc.gmfzuwos/downtmp/build.jJn/src/debian/tests/run-unit-test: 
line 33:  1590 Segmentation fault      megadepth tests/test_noprefix.bam 
--prefix test.bam --threads 4 --bigwig --auc --min-unique-qual 10 
--annotation tests/test_exons.bed --frag-dist --alts --include-softclip 
--only-polya --read-ends --test-polya --no-annotation-stdout 
--no-auc-stdout --filter-out 260 --add-chr-prefix human
autopkgtest [04:42:40]: test run-unit-test

-------------- next part --------------
A non-text attachment was scrubbed...
Name: OpenPGP_signature
Type: application/pgp-signature
Size: 495 bytes
Desc: OpenPGP digital signature
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20220731/69f8bcc5/attachment-0001.sig>