[Debian-med-packaging] Bug#1013577: Bug#1013577: picard-tools: FTBFS: PicardHelpDocWorkUnitHandler.java:6: error: cannot find symbol
olivier sallou
olivier.sallou at irisa.fr
Fri Jun 24 13:35:08 BST 2022
First, there are some com.sun.javadoc deprecation warnings
Should be replaced by jdk.javadoc.doclet [1] with certainly some
adaptation. Maybe a new tool release do that.
However those appear as warnings only , should not impact. But
following errors relate to classes using those com.sun packages as
undefined.... Strange
[1]
https://docs.oracle.com/javase/9/docs/api/jdk/javadoc/doclet/package-summary.html
On Fri, 2022-06-24 at 12:02 +0200, Lucas Nussbaum wrote:
> Source: picard-tools
> Version: 2.27.1+dfsg-1
> Severity: serious
> Justification: FTBFS
> Tags: bookworm sid ftbfs
> User: lucas at debian.org
> Usertags: ftbfs-20220624 ftbfs-bookworm
>
> Hi,
>
> During a rebuild of all packages in sid, your package failed to build
> on amd64.
>
>
> Relevant part (hopefully):
> > make[1]: Entering directory '/<<PKGBUILDDIR>>'
> > blhc: ignore-line-regexp: .*gradle.*ScriptTransformer.*
> > dh_auto_build -- jar javadoc
> > mkdir -p .gradle/init.d
> > cp /usr/share/gradle-debian-helper/init.gradle
> > .gradle/init.d/
> > gradle --info --console plain --offline --stacktrace --no-
> > daemon --refresh-dependencies --gradle-user-home .gradle -
> > Duser.home=. -Duser.name=debian -Ddebian.package=picard-tools -
> > Dfile.encoding=UTF-8 --parallel --max-workers=8 jar javadoc
> > Initialized native services in: /<<PKGBUILDDIR>>/.gradle/native
> > To honour the JVM settings for this build a new JVM will be forked.
> > Please consider using the daemon:
> > https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html.
> > Starting process 'Gradle build daemon'. Working directory:
> > /<<PKGBUILDDIR>>/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-
> > 11-openjdk-amd64/bin/java -Xbootclasspath/a:/usr/share/java/gradle-
> > helper-hook.jar:/usr/share/java/maven-repo-helper.jar -
> > Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -
> > Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar
> > org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1
> > Successfully started process 'Gradle build daemon'
> > An attempt to start the daemon took 0.8 secs.
> > The client will now receive all logging from the daemon (pid:
> > 2743140). The daemon log file:
> > /<<PKGBUILDDIR>>/.gradle/daemon/4.4.1/daemon-2743140.out.log
> > Daemon will be stopped at the end of the build stopping after
> > processing
> > Closing daemon's stdin at end of input.
> > The daemon will no longer process any standard input.
> > Using 8 worker leases.
> > Creating new cache for fileHashes, path
> > /<<PKGBUILDDIR>>/.gradle/caches/4.4.1/fileHashes/fileHashes.bin,
> > access org.gradle.cache.internal.DefaultCacheAccess at 5d50d694
> > Creating new cache for resourceHashesCache, path
> > /<<PKGBUILDDIR>>/.gradle/caches/4.4.1/fileHashes/resourceHashesCach
> > e.bin, access org.gradle.cache.internal.DefaultCacheAccess at 5d50d694
> > Creating new cache for fileHashes, path
> > /<<PKGBUILDDIR>>/.gradle/4.4.1/fileHashes/fileHashes.bin, access
> > org.gradle.cache.internal.DefaultCacheAccess at 77506432
> > Starting Build
> > Compiling initialization script
> > '/<<PKGBUILDDIR>>/.gradle/init.d/init.gradle' using
> > SubsetScriptTransformer.
> > Creating new cache for metadata-1.1/results, path
> > /<<PKGBUILDDIR>>/.gradle/caches/transforms-1/metadata-
> > 1.1/results.bin, access
> > org.gradle.cache.internal.DefaultCacheAccess at 647a5d82
> > Compiling initialization script
> > '/<<PKGBUILDDIR>>/.gradle/init.d/init.gradle' using
> > BuildScriptTransformer.
> > Compiling settings file '/<<PKGBUILDDIR>>/settings.gradle' using
> > SubsetScriptTransformer.
> > Compiling settings file '/<<PKGBUILDDIR>>/settings.gradle' using
> > BuildScriptTransformer.
> > Settings evaluated using settings file
> > '/<<PKGBUILDDIR>>/settings.gradle'.
> > Projects loaded. Root project using build file
> > '/<<PKGBUILDDIR>>/build.gradle'.
> > Included projects: [root project 'picard']
> > Keep-alive timer started
> > Adding Debian repository to project 'picard'
> > Parallel execution is an incubating feature.
> > Evaluating root project 'picard' using build file
> > '/<<PKGBUILDDIR>>/build.gradle'.
> > Compiling build file '/<<PKGBUILDDIR>>/build.gradle' using
> > SubsetScriptTransformer.
> > Compiling build file '/<<PKGBUILDDIR>>/build.gradle' using
> > BuildScriptTransformer.
> > Starting process 'command 'dpkg-parsechangelog''. Working
> > directory: /<<PKGBUILDDIR>> Command: dpkg-parsechangelog -S Version
> > Successfully started process 'command 'dpkg-parsechangelog''
> > build for version:2.27.1
> > Creating new cache for metadata-2.36/module-metadata, path
> > /<<PKGBUILDDIR>>/.gradle/caches/modules-2/metadata-2.36/module-
> > metadata.bin, access
> > org.gradle.cache.internal.DefaultCacheAccess at 54b0c013
> > Loading the Maven rules...
> > Replacing com.intel.gkl:gkl:jar:0.8.8 ->
> > com.intel.gkl:gkl:jar:debian
> > Replacing com.google.guava:guava:jar:15.0 ->
> > com.google.guava:guava:jar:debian
> > Passing through com.google.guava:guava-parent:jar:debian
> > Passing through commons-io:commons-io:jar:debian
> > Passing through org.apache.commons:commons-
> > parent:jar:debian
> > Passing through org.apache:apache:jar:debian
> > Replacing org.apache.commons:commons-math3:jar:3.5 ->
> > org.apache.commons:commons-math3:jar:debian
> > Replacing org.apache.commons:commons-collections4:jar:4.3
> > -> org.apache.commons:commons-collections4:jar:debian
> > Replacing commons-lang:commons-lang:jar:2.6 -> commons-
> > lang:commons-lang:jar:debian
> > Replacing com.github.samtools:htsjdk:jar:2.24.1 ->
> > com.github.samtools:htsjdk:jar:debian
> > Replacing org.broadinstitute:barclay:jar:4.0.2 ->
> > org.broadinstitute:barclay:jar:debian
> > Replacing org.apache.logging.log4j:log4j-api:jar:2.17.1 -
> > > org.apache.logging.log4j:log4j-api:jar:debian
> > Passing through org.apache.logging.log4j:log4j:jar:debian
> > Replacing org.apache.logging.log4j:log4j-core:jar:2.17.1 -
> > > org.apache.logging.log4j:log4j-core:jar:debian
> > Passing through org.apache.commons:commons-lang3:jar:debian
> > Passing through org.broadinstitute:gatk-native-
> > bindings:jar:debian
> > Passing through org.jsr-305:jsr305:jar:0.x
> > Passing through org.apache.commons:commons-jexl:jar:debian
> > Passing through commons-logging:commons-logging:jar:debian
> > Passing through org.xerial.snappy:snappy-java:jar:debian
> > Passing through org.apache.commons:commons-
> > compress:jar:debian
> > Passing through org.tukaani:xz:jar:debian
> > Passing through gov.nih.nlm.ncbi:ngs-java:jar:debian
> > Passing through net.sf.jopt-simple:jopt-simple:jar:debian
> > Passing through com.google.code.gson:gson:jar:debian
> > Passing through com.google.code.gson:gson-parent:jar:debian
> > Passing through org.freemarker:freemarker:jar:debian
> > Adding Maven pom generation to project 'picard'
> > Linking the generated javadoc to the system JDK API
> > documentation
> > All projects evaluated.
> > Selected primary task 'jar' from project :
> > Creating new cache for annotation-processors, path
> > /<<PKGBUILDDIR>>/.gradle/4.4.1/fileContent/annotation-
> > processors.bin, access
> > org.gradle.cache.internal.DefaultCacheAccess at 7d1e404f
> > Selected primary task 'javadoc' from project :
> > Tasks to be executed: [task ':compileJava', task
> > ':processResources', task ':classes', task ':debianMavenPom', task
> > ':jar', task ':javadoc']
> > Creating new cache for resourceHashesCache, path
> > /<<PKGBUILDDIR>>/.gradle/4.4.1/fileHashes/resourceHashesCache.bin,
> > access org.gradle.cache.internal.DefaultCacheAccess at 77506432
> > Creating new cache for taskHistory, path
> > /<<PKGBUILDDIR>>/.gradle/4.4.1/taskHistory/taskHistory.bin, access
> > org.gradle.cache.internal.DefaultCacheAccess at 1cc3e9c
> > Creating new cache for outputFiles, path
> > /<<PKGBUILDDIR>>/.gradle/buildOutputCleanup/outputFiles.bin, access
> > org.gradle.cache.internal.DefaultCacheAccess at 3baad5c0
> > :compileJava (Thread[Task worker for ':',5,main]) started.
> > :compileJava
> > Putting task artifact state for task ':compileJava' into context
> > took 0.003 secs.
> > Up-to-date check for task ':compileJava' took 2.058 secs. It is not
> > up-to-date because:
> > No history is available.
> > All input files are considered out-of-date for incremental task
> > ':compileJava'.
> > Compiling with JDK Java compiler API.
> > /<<PKGBUILDDIR>>/src/main/java/picard/util/help/PicardHelpDocWorkUn
> > itHandler.java:3: warning: [removal] FieldDoc in com.sun.javadoc
> > has been deprecated and marked for removal
> > import com.sun.javadoc.FieldDoc;
> > ^
> > /<<PKGBUILDDIR>>/src/main/java/picard/util/help/PicardHelpDoclet.ja
> > va:3: warning: [removal] ClassDoc in com.sun.javadoc has been
> > deprecated and marked for removal
> > import com.sun.javadoc.ClassDoc;
> > ^
> > /<<PKGBUILDDIR>>/src/main/java/picard/util/help/PicardHelpDoclet.ja
> > va:4: warning: [removal] RootDoc in com.sun.javadoc has been
> > deprecated and marked for removal
> > import com.sun.javadoc.RootDoc;
> > ^
> > /<<PKGBUILDDIR>>/src/main/java/picard/util/help/PicardHelpDocWorkUn
> > itHandler.java:3: warning: [removal] FieldDoc in com.sun.javadoc
> > has been deprecated and marked for removal
> > import com.sun.javadoc.FieldDoc;
> > ^
> > /<<PKGBUILDDIR>>/src/main/java/picard/util/help/PicardHelpDocWorkUn
> > itHandler.java:6: error: cannot find symbol
> > import org.broadinstitute.barclay.help.DefaultDocWorkUnitHandler;
> > ^
> > symbol: class DefaultDocWorkUnitHandler
> > location: package org.broadinstitute.barclay.help
> > /<<PKGBUILDDIR>>/src/main/java/picard/util/help/PicardHelpDocWorkUn
> > itHandler.java:7: error: cannot find symbol
> > import org.broadinstitute.barclay.help.DocWorkUnit;
> > ^
> > symbol: class DocWorkUnit
> > location: package org.broadinstitute.barclay.help
> > /<<PKGBUILDDIR>>/src/main/java/picard/util/help/PicardHelpDocWorkUn
> > itHandler.java:9: error: cannot find symbol
> > import org.broadinstitute.barclay.help.HelpDoclet;
> > ^
> > symbol: class HelpDoclet
> > location: package org.broadinstitute.barclay.help
> > /<<PKGBUILDDIR>>/src/main/java/picard/util/help/PicardHelpDocWorkUn
> > itHandler.java:23: error: cannot find symbol
> > public class PicardHelpDocWorkUnitHandler extends
> > DefaultDocWorkUnitHandler {
> > ^
> > symbol: class DefaultDocWorkUnitHandler
> > /<<PKGBUILDDIR>>/src/main/java/picard/util/help/PicardHelpDocWorkUn
> > itHandler.java:36: error: cannot find symbol
> > public PicardHelpDocWorkUnitHandler(final HelpDoclet doclet) {
> > ^
> > symbol: class HelpDoclet
> > location: class PicardHelpDocWorkUnitHandler
> > /<<PKGBUILDDIR>>/src/main/java/picard/util/help/PicardHelpDocWorkUn
> > itHandler.java:53: error: cannot find symbol
> > public String getTemplateName(final DocWorkUnit workUnit) {
> > ^
> > symbol: class DocWorkUnit
> > location: class PicardHelpDocWorkUnitHandler
> > /<<PKGBUILDDIR>>/src/main/java/picard/util/help/PicardHelpDocWorkUn
> > itHandler.java:69: error: cannot find symbol
> > protected void addCustomBindings(final DocWorkUnit
> > currentWorkUnit) {
> > ^
> > symbol: class DocWorkUnit
> > location: class PicardHelpDocWorkUnitHandler
> > /<<PKGBUILDDIR>>/src/main/java/picard/util/help/PicardHelpDoclet.ja
> > va:3: warning: [removal] ClassDoc in com.sun.javadoc has been
> > deprecated and marked for removal
> > import com.sun.javadoc.ClassDoc;
> > ^
> > /<<PKGBUILDDIR>>/src/main/java/picard/util/help/PicardHelpDoclet.ja
> > va:4: warning: [removal] RootDoc in com.sun.javadoc has been
> > deprecated and marked for removal
> > import com.sun.javadoc.RootDoc;
> > ^
> > /<<PKGBUILDDIR>>/src/main/java/picard/util/help/PicardHelpDoclet.ja
> > va:8: error: cannot find symbol
> > import org.broadinstitute.barclay.help.DocWorkUnit;
> > ^
> > symbol: class DocWorkUnit
> > location: package org.broadinstitute.barclay.help
> > /<<PKGBUILDDIR>>/src/main/java/picard/util/help/PicardHelpDoclet.ja
> > va:10: error: cannot find symbol
> > import org.broadinstitute.barclay.help.HelpDoclet;
> > ^
> > symbol: class HelpDoclet
> > location: package org.broadinstitute.barclay.help
> > /<<PKGBUILDDIR>>/src/main/java/picard/util/help/PicardHelpDoclet.ja
> > va:23: error: cannot find symbol
> > public class PicardHelpDoclet extends HelpDoclet {
> > ^
> > symbol: class HelpDoclet
> > /<<PKGBUILDDIR>>/src/main/java/picard/util/help/PicardHelpDoclet.ja
> > va:56: error: cannot find symbol
> > protected DocWorkUnit createWorkUnit(
> > ^
> > symbol: class DocWorkUnit
> > location: class PicardHelpDoclet
> > /<<PKGBUILDDIR>>/src/main/java/picard/util/help/PicardHelpDoclet.ja
> > va:75: error: cannot find symbol
> > protected final Map<String, String> getGroupMap(final
> > DocWorkUnit docWorkUnit) {
> > ^
> > symbol: class DocWorkUnit
> > location: class PicardHelpDoclet
> > Note:
> > /<<PKGBUILDDIR>>/src/main/java/picard/analysis/CollectOxoGMetrics.j
> > ava uses or overrides a deprecated API.
> > Note: Recompile with -Xlint:deprecation for details.
> > 12 errors
> > 6 warnings
> > :compileJava FAILED
> > :compileJava (Thread[Task worker for ':',5,main]) completed. Took
> > 4.317 secs.
> >
> > FAILURE: Build failed with an exception.
> >
> > * What went wrong:
> > Execution failed for task ':compileJava'.
> > > Compilation failed; see the compiler error output for details.
> >
> > * Try:
> > Run with --debug option to get more log output. Run with --scan to
> > get full insights.
> >
> > * Exception is:
> > org.gradle.api.tasks.TaskExecutionException: Execution failed for
> > task ':compileJava'.
> > at
> > org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.
> > executeActions(ExecuteActionsTaskExecuter.java:100)
> > at
> > org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.
> > execute(ExecuteActionsTaskExecuter.java:70)
> > at
> > org.gradle.api.internal.tasks.execution.OutputDirectoryCreatingTask
> > Executer.execute(OutputDirectoryCreatingTaskExecuter.java:51)
> > at
> > org.gradle.api.internal.tasks.execution.SkipUpToDateTaskExecuter.ex
> > ecute(SkipUpToDateTaskExecuter.java:62)
> > at
> > org.gradle.api.internal.tasks.execution.ResolveTaskOutputCachingSta
> > teExecuter.execute(ResolveTaskOutputCachingStateExecuter.java:54)
> > at
> > org.gradle.api.internal.tasks.execution.ValidatingTaskExecuter.exec
> > ute(ValidatingTaskExecuter.java:60)
> > at
> > org.gradle.api.internal.tasks.execution.SkipEmptySourceFilesTaskExe
> > cuter.execute(SkipEmptySourceFilesTaskExecuter.java:97)
> > at
> > org.gradle.api.internal.tasks.execution.CleanupStaleOutputsExecuter
> > .execute(CleanupStaleOutputsExecuter.java:87)
> > at
> > org.gradle.api.internal.tasks.execution.ResolveTaskArtifactStateTas
> > kExecuter.execute(ResolveTaskArtifactStateTaskExecuter.java:52)
> > at
> > org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecut
> > er.execute(SkipTaskWithNoActionsExecuter.java:52)
> > at
> > org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.exec
> > ute(SkipOnlyIfTaskExecuter.java:54)
> > at
> > org.gradle.api.internal.tasks.execution.ExecuteAtMostOnceTaskExecut
> > er.execute(ExecuteAtMostOnceTaskExecuter.java:43)
> > at
> > org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.
> > execute(CatchExceptionTaskExecuter.java:34)
> > at
> > org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiring
> > TaskWorker$1.run(DefaultTaskGraphExecuter.java:248)
> > at
> > org.gradle.internal.progress.DefaultBuildOperationExecutor$Runnable
> > BuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336
> > )
> > at
> > org.gradle.internal.progress.DefaultBuildOperationExecutor$Runnable
> > BuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328
> > )
> > at
> > org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(
> > DefaultBuildOperationExecutor.java:199)
> > at
> > org.gradle.internal.progress.DefaultBuildOperationExecutor.run(Defa
> > ultBuildOperationExecutor.java:110)
> > at
> > org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiring
> > TaskWorker.execute(DefaultTaskGraphExecuter.java:241)
> > at
> > org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiring
> > TaskWorker.execute(DefaultTaskGraphExecuter.java:230)
> > at
> > org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutor
> > Worker.processTask(DefaultTaskPlanExecutor.java:123)
> > at
> > org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutor
> > Worker.access$200(DefaultTaskPlanExecutor.java:79)
> > at
> > org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutor
> > Worker$1.execute(DefaultTaskPlanExecutor.java:104)
> > at
> > org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutor
> > Worker$1.execute(DefaultTaskPlanExecutor.java:98)
> > at
> > org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.execute(Def
> > aultTaskExecutionPlan.java:626)
> > at
> > org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.executeWith
> > Task(DefaultTaskExecutionPlan.java:581)
> > at
> > org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutor
> > Worker.run(DefaultTaskPlanExecutor.java:98)
> > at
> > org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailure
> > s.onExecute(ExecutorPolicy.java:63)
> > at
> > org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExe
> > cutorImpl.java:46)
> > at
> > org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunna
> > ble.run(ThreadFactoryImpl.java:55)
> > Caused by:
> > org.gradle.api.internal.tasks.compile.CompilationFailedException:
> > Compilation failed; see the compiler error output for details.
> > at
> > org.gradle.api.internal.tasks.compile.JdkJavaCompiler.execute(JdkJa
> > vaCompiler.java:50)
> > at
> > org.gradle.api.internal.tasks.compile.JdkJavaCompiler.execute(JdkJa
> > vaCompiler.java:35)
> > at
> > org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler.deleg
> > ateAndHandleErrors(NormalizingJavaCompiler.java:98)
> > at
> > org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler.execu
> > te(NormalizingJavaCompiler.java:51)
> > at
> > org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler.execu
> > te(NormalizingJavaCompiler.java:37)
> > at
> > org.gradle.api.internal.tasks.compile.CleaningJavaCompilerSupport.e
> > xecute(CleaningJavaCompilerSupport.java:35)
> > at
> > org.gradle.api.internal.tasks.compile.CleaningJavaCompilerSupport.e
> > xecute(CleaningJavaCompilerSupport.java:25)
> > at
> > org.gradle.api.tasks.compile.JavaCompile.performCompilation(JavaCom
> > pile.java:207)
> > at
> > org.gradle.api.tasks.compile.JavaCompile.compile(JavaCompile.java:1
> > 92)
> > at
> > org.gradle.api.tasks.compile.JavaCompile.compile(JavaCompile.java:1
> > 24)
> > at
> > java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Nat
> > ive Method)
> > at
> > java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Nati
> > veMethodAccessorImpl.java:62)
> > at
> > java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(
> > DelegatingMethodAccessorImpl.java:43)
> > at
> > org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:73)
> > at
> > org.gradle.api.internal.project.taskfactory.IncrementalTaskAction.d
> > oExecute(IncrementalTaskAction.java:46)
> > at
> > org.gradle.api.internal.project.taskfactory.StandardTaskAction.exec
> > ute(StandardTaskAction.java:39)
> > at
> > org.gradle.api.internal.project.taskfactory.StandardTaskAction.exec
> > ute(StandardTaskAction.java:26)
> > at
> > org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$
> > 1.run(ExecuteActionsTaskExecuter.java:121)
> > at
> > org.gradle.internal.progress.DefaultBuildOperationExecutor$Runnable
> > BuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336
> > )
> > at
> > org.gradle.internal.progress.DefaultBuildOperationExecutor$Runnable
> > BuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328
> > )
> > at
> > org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(
> > DefaultBuildOperationExecutor.java:199)
> > at
> > org.gradle.internal.progress.DefaultBuildOperationExecutor.run(Defa
> > ultBuildOperationExecutor.java:110)
> > at
> > org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.
> > executeAction(ExecuteActionsTaskExecuter.java:110)
> > at
> > org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.
> > executeActions(ExecuteActionsTaskExecuter.java:92)
> > ... 29 more
> >
> >
> > * Get more help at https://help.gradle.org
> >
> > BUILD FAILED in 9s
> > 1 actionable task: 1 executed
> > dh_auto_build: error: gradle --info --console plain --offline --
> > stacktrace --no-daemon --refresh-dependencies --gradle-user-home
> > .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=picard-
> > tools -Dfile.encoding=UTF-8 --parallel --max-workers=8 jar javadoc
> > returned exit code 1
> > make[1]: *** [debian/rules:18: override_dh_auto_build] Error 25
>
>
> The full build log is available from:
> http://qa-logs.debian.net/2022/06/24/picard-tools_2.27.1+dfsg-1_unstable.log
>
> All bugs filed during this archive rebuild are listed at:
> https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20220624;users=lucas@debian.org
> or:
> https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20220624&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
>
> A list of current common problems and possible solutions is available
> at
> http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to
> contribute!
>
> If you reassign this bug to another package, please marking it as
> 'affects'-ing
> this package. See https://www.debian.org/Bugs/server-control#affects
>
> If you fail to reproduce this, please provide a build log and diff it
> with mine
> so that we can identify if something relevant changed in the
> meantime.
>
> _______________________________________________
> Debian-med-packaging mailing list
> Debian-med-packaging at alioth-lists.debian.net
> https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-packaging
--
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (keyring.debian.org)
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