[Debian-med-packaging] Bug#1011156: First steps

Pierre Gruet pgt at debian.org
Sun Jun 26 20:39:08 BST 2022


Hello,

In version 2.27.2+dfsg-1, I removed the problematic classes but another 
error shows up (see below). I wonder if this is a gradle issue or 
something else, I'm not investigating further for the moment.

Relevant part (hopefully):



dh_auto_build -- jar javadoc
         mkdir -p .gradle/init.d
         cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/
         gradle --info --console plain --offline --stacktrace 
--no-daemon --refresh-dependencies --gradle-user-home .gradle 
-Duser.home=. -Duser.name=debian -Ddebian.package=picard-tools 
-Dfile.encoding=UTF-8 --parallel --max-workers=4 jar javadoc
OpenJDK 64-Bit Server VM warning: Ignoring option 
--illegal-access=permit; support was removed in 17.0
Initialized native services in: /<<PKGBUILDDIR>>/.gradle/native
To honour the JVM settings for this build a new JVM will be forked. 
Please consider using the daemon: 
https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html.
Starting process 'Gradle build daemon'. Working directory: 
/<<PKGBUILDDIR>>/.gradle/daemon/4.4.1 Command: 
/usr/lib/jvm/java-17-openjdk-amd64/bin/java 
-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar 
-Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant 
-cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar 
org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1
Successfully started process 'Gradle build daemon'
An attempt to start the daemon took 1.138 secs.
The client will now receive all logging from the daemon (pid: 1466549). 
The daemon log file: 
/<<PKGBUILDDIR>>/.gradle/daemon/4.4.1/daemon-1466549.out.log
Daemon will be stopped at the end of the build stopping after processing
Closing daemon's stdin at end of input.
The daemon will no longer process any standard input.
Using 4 worker leases.
Creating new cache for fileHashes, path 
/<<PKGBUILDDIR>>/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access 
org.gradle.cache.internal.DefaultCacheAccess at 4bf2c6ca
Creating new cache for resourceHashesCache, path 
/<<PKGBUILDDIR>>/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, 
access org.gradle.cache.internal.DefaultCacheAccess at 4bf2c6ca
Creating new cache for fileHashes, path 
/<<PKGBUILDDIR>>/.gradle/4.4.1/fileHashes/fileHashes.bin, access 
org.gradle.cache.internal.DefaultCacheAccess at 1951b69e

FAILURE: Build failed with an exception.

* What went wrong:
Could not create service of type ScriptPluginFactory using 
BuildScopeServices.createScriptPluginFactory().
 > Could not create service of type PluginResolutionStrategyInternal 
using BuildScopeServices.createPluginResolutionStrategy().

* Try:
Run with --debug option to get more log output. Run with --scan to get 
full insights.

* Exception is:
org.gradle.internal.service.ServiceCreationException: Could not create 
service of type ScriptPluginFactory using 
BuildScopeServices.createScriptPluginFactory().
         at 
org.gradle.internal.service.DefaultServiceRegistry$FactoryMethodService.invokeMethod(DefaultServiceRegistry.java:797)
         at 
org.gradle.internal.service.DefaultServiceRegistry$FactoryService.create(DefaultServiceRegistry.java:748)
         at 
org.gradle.internal.service.DefaultServiceRegistry$ManagedObjectProvider.getInstance(DefaultServiceRegistry.java:574)
         at 
org.gradle.internal.service.DefaultServiceRegistry$SingletonService.get(DefaultServiceRegistry.java:623)
         at 
org.gradle.internal.service.DefaultServiceRegistry$FactoryService.assembleParameters(DefaultServiceRegistry.java:761)
         at 
org.gradle.internal.service.DefaultServiceRegistry$FactoryService.create(DefaultServiceRegistry.java:747)
         at 
org.gradle.internal.service.DefaultServiceRegistry$ManagedObjectProvider.getInstance(DefaultServiceRegistry.java:574)
         at 
org.gradle.internal.service.DefaultServiceRegistry$SingletonService.get(DefaultServiceRegistry.java:623)
         at 
org.gradle.internal.service.DefaultServiceRegistry$FactoryService.assembleParameters(DefaultServiceRegistry.java:761)
         at 
org.gradle.internal.service.DefaultServiceRegistry$FactoryService.create(DefaultServiceRegistry.java:747)
         at 
org.gradle.internal.service.DefaultServiceRegistry$ManagedObjectProvider.getInstance(DefaultServiceRegistry.java:574)
         at 
org.gradle.internal.service.DefaultServiceRegistry$SingletonService.get(DefaultServiceRegistry.java:623)
         at 
org.gradle.internal.service.DefaultServiceRegistry.doGet(DefaultServiceRegistry.java:344)
         at 
org.gradle.internal.service.DefaultServiceRegistry.get(DefaultServiceRegistry.java:325)
         at 
org.gradle.initialization.DefaultGradleLauncherFactory.doNewInstance(DefaultGradleLauncherFactory.java:174)
         at 
org.gradle.initialization.DefaultGradleLauncherFactory.newInstance(DefaultGradleLauncherFactory.java:106)
         at 
org.gradle.launcher.exec.InProcessBuildActionExecuter.execute(InProcessBuildActionExecuter.java:40)
         at 
org.gradle.launcher.exec.InProcessBuildActionExecuter.execute(InProcessBuildActionExecuter.java:30)
         at 
org.gradle.launcher.exec.BuildTreeScopeBuildActionExecuter.execute(BuildTreeScopeBuildActionExecuter.java:39)
         at 
org.gradle.launcher.exec.BuildTreeScopeBuildActionExecuter.execute(BuildTreeScopeBuildActionExecuter.java:25)
         at 
org.gradle.tooling.internal.provider.ContinuousBuildActionExecuter.execute(ContinuousBuildActionExecuter.java:80)
         at 
org.gradle.tooling.internal.provider.ContinuousBuildActionExecuter.execute(ContinuousBuildActionExecuter.java:53)
         at 
org.gradle.tooling.internal.provider.ServicesSetupBuildActionExecuter.execute(ServicesSetupBuildActionExecuter.java:57)
         at 
org.gradle.tooling.internal.provider.ServicesSetupBuildActionExecuter.execute(ServicesSetupBuildActionExecuter.java:32)
         at 
org.gradle.tooling.internal.provider.GradleThreadBuildActionExecuter.execute(GradleThreadBuildActionExecuter.java:36)
         at 
org.gradle.tooling.internal.provider.GradleThreadBuildActionExecuter.execute(GradleThreadBuildActionExecuter.java:25)
         at 
org.gradle.tooling.internal.provider.ParallelismConfigurationBuildActionExecuter.execute(ParallelismConfigurationBuildActionExecuter.java:43)
         at 
org.gradle.tooling.internal.provider.ParallelismConfigurationBuildActionExecuter.execute(ParallelismConfigurationBuildActionExecuter.java:29)
         at 
org.gradle.tooling.internal.provider.StartParamsValidatingActionExecuter.execute(StartParamsValidatingActionExecuter.java:69)
         at 
org.gradle.tooling.internal.provider.StartParamsValidatingActionExecuter.execute(StartParamsValidatingActionExecuter.java:30)
         at 
org.gradle.tooling.internal.provider.SessionFailureReportingActionExecuter.execute(SessionFailureReportingActionExecuter.java:59)
         at 
org.gradle.tooling.internal.provider.SessionFailureReportingActionExecuter.execute(SessionFailureReportingActionExecuter.java:44)
         at 
org.gradle.tooling.internal.provider.SetupLoggingActionExecuter.execute(SetupLoggingActionExecuter.java:45)
         at 
org.gradle.tooling.internal.provider.SetupLoggingActionExecuter.execute(SetupLoggingActionExecuter.java:30)
         at 
org.gradle.launcher.daemon.server.exec.ExecuteBuild.doBuild(ExecuteBuild.java:67)
         at 
org.gradle.launcher.daemon.server.exec.BuildCommandOnly.execute(BuildCommandOnly.java:36)
         at 
org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122)
         at 
org.gradle.launcher.daemon.server.exec.WatchForDisconnection.execute(WatchForDisconnection.java:37)
         at 
org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122)
         at 
org.gradle.launcher.daemon.server.exec.ResetDeprecationLogger.execute(ResetDeprecationLogger.java:26)
         at 
org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122)
         at 
org.gradle.launcher.daemon.server.exec.RequestStopIfSingleUsedDaemon.execute(RequestStopIfSingleUsedDaemon.java:34)
         at 
org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122)
         at 
org.gradle.launcher.daemon.server.exec.ForwardClientInput$2.call(ForwardClientInput.java:74)
         at 
org.gradle.launcher.daemon.server.exec.ForwardClientInput$2.call(ForwardClientInput.java:72)
         at org.gradle.util.Swapper.swap(Swapper.java:38)
         at 
org.gradle.launcher.daemon.server.exec.ForwardClientInput.execute(ForwardClientInput.java:72)
         at 
org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122)
         at 
org.gradle.launcher.daemon.server.exec.LogAndCheckHealth.execute(LogAndCheckHealth.java:50)
         at 
org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122)
         at 
org.gradle.launcher.daemon.server.exec.LogToClient.doBuild(LogToClient.java:62)
         at 
org.gradle.launcher.daemon.server.exec.BuildCommandOnly.execute(BuildCommandOnly.java:36)
         at 
org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122)
         at 
org.gradle.launcher.daemon.server.exec.EstablishBuildEnvironment.doBuild(EstablishBuildEnvironment.java:82)
         at 
org.gradle.launcher.daemon.server.exec.BuildCommandOnly.execute(BuildCommandOnly.java:36)
         at 
org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:122)
         at 
org.gradle.launcher.daemon.server.exec.StartBuildOrRespondWithBusy$1.run(StartBuildOrRespondWithBusy.java:50)
         at 
org.gradle.launcher.daemon.server.DaemonStateCoordinator$1.run(DaemonStateCoordinator.java:295)
         at 
org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63)
         at 
org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46)
         at 
org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55)
Caused by: org.gradle.internal.service.ServiceCreationException: Could 
not create service of type PluginResolutionStrategyInternal using 
BuildScopeServices.createPluginResolutionStrategy().
         at 
org.gradle.internal.service.DefaultServiceRegistry$FactoryMethodService.invokeMethod(DefaultServiceRegistry.java:797)
         at 
org.gradle.internal.service.DefaultServiceRegistry$FactoryService.create(DefaultServiceRegistry.java:748)
         at 
org.gradle.internal.service.DefaultServiceRegistry$ManagedObjectProvider.getInstance(DefaultServiceRegistry.java:574)
         at 
org.gradle.internal.service.DefaultServiceRegistry$SingletonService.get(DefaultServiceRegistry.java:623)
         at 
org.gradle.internal.service.DefaultServiceRegistry$FactoryService.assembleParameters(DefaultServiceRegistry.java:761)
         at 
org.gradle.internal.service.DefaultServiceRegistry$FactoryService.create(DefaultServiceRegistry.java:747)
         at 
org.gradle.internal.service.DefaultServiceRegistry$ManagedObjectProvider.getInstance(DefaultServiceRegistry.java:574)
         at 
org.gradle.internal.service.DefaultServiceRegistry$SingletonService.get(DefaultServiceRegistry.java:623)
         at 
org.gradle.internal.service.DefaultServiceRegistry.doGet(DefaultServiceRegistry.java:344)
         at 
org.gradle.internal.service.DefaultServiceRegistry.get(DefaultServiceRegistry.java:325)
         at 
org.gradle.internal.service.scopes.BuildScopeServices.defaultScriptPluginFactory(BuildScopeServices.java:300)
         at 
org.gradle.internal.service.scopes.BuildScopeServices.createScriptPluginFactory(BuildScopeServices.java:287)
         at 
java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native 
Method)
         at 
java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
         at 
java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
         at 
org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:73)
         at 
org.gradle.internal.service.ReflectionBasedServiceMethod.invoke(ReflectionBasedServiceMethod.java:35)
         at 
org.gradle.internal.service.DefaultServiceRegistry$FactoryMethodService.invokeMethod(DefaultServiceRegistry.java:795)
         ... 60 more
Caused by: org.gradle.api.GradleException: Could not generate a proxy 
class for class 
org.gradle.plugin.management.internal.DefaultPluginResolutionStrategy.
         at 
org.gradle.api.internal.AbstractClassGenerator.generateUnderLock(AbstractClassGenerator.java:223)
         at 
org.gradle.api.internal.AbstractClassGenerator.generate(AbstractClassGenerator.java:79)
         at 
org.gradle.api.internal.ClassGeneratorBackedInstantiator.newInstance(ClassGeneratorBackedInstantiator.java:36)
         at 
org.gradle.plugin.internal.PluginUsePluginServiceRegistry$BuildScopeServices.createPluginResolutionStrategy(PluginUsePluginServiceRegistry.java:113)
         at 
java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native 
Method)
         at 
java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
         at 
java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
         at 
org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:73)
         at 
org.gradle.internal.service.ReflectionBasedServiceMethod.invoke(ReflectionBasedServiceMethod.java:35)
         at 
org.gradle.internal.service.DefaultServiceRegistry$FactoryMethodService.invokeMethod(DefaultServiceRegistry.java:795)
         ... 77 more
Caused by: org.gradle.internal.UncheckedException: 
java.lang.IllegalAccessException: module java.base does not open 
java.lang to unnamed module @28f2a10f
         at 
org.gradle.internal.UncheckedException.throwAsUncheckedException(UncheckedException.java:63)
         at 
org.gradle.internal.UncheckedException.throwAsUncheckedException(UncheckedException.java:40)
         at 
org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:76)
         at 
org.gradle.internal.classloader.ClassLoaderUtils$LookupClassDefiner.defineClass(ClassLoaderUtils.java:142)
         at 
org.gradle.internal.classloader.ClassLoaderUtils.define(ClassLoaderUtils.java:92)
         at 
org.gradle.model.internal.asm.AsmClassGenerator.define(AsmClassGenerator.java:58)
         at 
org.gradle.model.internal.asm.AsmClassGenerator.define(AsmClassGenerator.java:54)
         at 
org.gradle.api.internal.AsmBackedClassGenerator$ClassBuilderImpl.generate(AsmBackedClassGenerator.java:967)
         at 
org.gradle.api.internal.AbstractClassGenerator.generateUnderLock(AbstractClassGenerator.java:221)
         ... 86 more
Caused by: java.lang.IllegalAccessException: module java.base does not 
open java.lang to unnamed module @28f2a10f
         at 
java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native 
Method)
         at 
java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
         at 
java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
         at 
org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:73)
         ... 92 more


* Get more help at https://help.gradle.org

BUILD FAILED in 2s
dh_auto_build: error: gradle --info --console plain --offline 
--stacktrace --no-daemon --refresh-dependencies --gradle-user-home 
.gradle -Duser.home=. -Duser.name=debian -Ddebian.package=picard-tools 
-Dfile.encoding=UTF-8 --parallel --max-workers=4 jar javadoc returned 
exit code 1
make[1]: *** [debian/rules:18: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:10: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit 
status 2




Best regards,

-- 
Pierre
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