[Debian-med-packaging] Bug#1014100: qiime: autopkgtest needs update for new version of python-decorator
Paul Gevers
elbrus at debian.org
Thu Jun 30 10:30:21 BST 2022
Source: qiime
Version: 2021.8.0-2
Severity: serious
X-Debbugs-CC: python-decorator at packages.debian.org
Tags: sid bookworm
User: debian-ci at lists.debian.org
Usertags: needs-update
Control: affects -1 src:python-decorator
Dear maintainer(s),
With a recent upload of python-decorator the autopkgtest of qiime fails
in testing when that autopkgtest is run with the binary packages of
python-decorator from unstable. It passes when run with only packages
from testing. In tabular form:
pass fail
python-decorator from testing 5.1.1-2
qiime from testing 2021.8.0-2
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of python-decorator
to testing [1]. Of course, python-decorator shouldn't just break your
autopkgtest (or even worse, your package), but it seems to me that the
change in python-decorator was intended and your package needs to update
to the new situation. To me it looks like the references need updating
for the new version but I might be wrong.
If this is a real problem in your package (and not only in your
autopkgtest), the right binary package(s) from python-decorator should
really add a versioned Breaks on the unfixed version of (one of your)
package(s). Note: the Breaks is nice even if the issue is only in the
autopkgtest as it helps the migration software to figure out the right
versions to combine in the tests.
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=python-decorator
https://ci.debian.net/data/autopkgtest/testing/amd64/q/qiime/23173367/log.gz
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FF.........F....................................................................................................................................FF..........................................
======================================================================
FAIL: test_callable_and_async_signature_with_artifacts_and_parameters
(qiime2.sdk.tests.test_method.TestMethod)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/tmp/autopkgtest-lxc.t_q3d0jx/downtmp/autopkgtest_tmp/qiime2/sdk/tests/test_method.py",
line 223, in test_callable_and_async_signature_with_artifacts_and_parameters
self.assertEqual(parameters, exp_parameters)
AssertionError: Lists differ: [('in[20 chars]ts1: list">), ('ints2',
<Parameter "ints2: lis[108 chars]t">)] != [('in[20 chars]ts1:
IntSequence1 | IntSequence2">), ('ints2',[147 chars]t">)]
First differing element 0:
('ints1', <Parameter "ints1: list">)
('ints1', <Parameter "ints1: IntSequence1 | IntSequence2">)
Diff is 735 characters long. Set self.maxDiff to None to see it.
======================================================================
FAIL: test_callable_and_async_signature_with_no_parameters
(qiime2.sdk.tests.test_method.TestMethod)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/tmp/autopkgtest-lxc.t_q3d0jx/downtmp/autopkgtest_tmp/qiime2/sdk/tests/test_method.py",
line 242, in test_callable_and_async_signature_with_no_parameters
self.assertEqual(parameters, exp_parameters)
AssertionError: Lists differ: [('ma[26 chars]ng1: dict">), ('mapping2',
<Parameter "mapping2: dict">)] != [('ma[26 chars]ng1: Mapping">),
('mapping2', <Parameter "mapping2: Mapping">)]
First differing element 0:
('mapping1', <Parameter "mapping1: dict">)
('mapping1', <Parameter "mapping1: Mapping">)
- [('mapping1', <Parameter "mapping1: dict">),
? ^ ^^
+ [('mapping1', <Parameter "mapping1: Mapping">),
? ^^^^ ^^
- ('mapping2', <Parameter "mapping2: dict">)]
? ^ ^^
+ ('mapping2', <Parameter "mapping2: Mapping">)]
? ^^^^ ^^
======================================================================
FAIL: test_callable_and_async_signature
(qiime2.sdk.tests.test_pipeline.TestPipeline)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/tmp/autopkgtest-lxc.t_q3d0jx/downtmp/autopkgtest_tmp/qiime2/sdk/tests/test_pipeline.py",
line 78, in test_callable_and_async_signature
self.assertEqual(parameters, exp_parameters)
AssertionError: Lists differ: [('in[32 chars]uence">), ('mapping',
<Parameter "mapping">), [74 chars]1">)] != [('in[32 chars]uence:
IntSequence1">), ('mapping', <Parameter[110 chars]1">)]
First differing element 0:
('int_sequence', <Parameter "int_sequence">)
('int_sequence', <Parameter "int_sequence: IntSequence1">)
- [('int_sequence', <Parameter "int_sequence">),
+ [('int_sequence', <Parameter "int_sequence: IntSequence1">),
? ++++++++++++++
- ('mapping', <Parameter "mapping">),
+ ('mapping', <Parameter "mapping: Mapping">),
? +++++++++
- ('do_extra_thing', <Parameter "do_extra_thing">),
+ ('do_extra_thing', <Parameter "do_extra_thing: Bool">),
? ++++++
- ('add', <Parameter "add=1">)]
+ ('add', <Parameter "add: Int = 1">)]
? ++++++ +
======================================================================
FAIL: test_callable_and_async_different_signature
(qiime2.sdk.tests.test_visualizer.TestVisualizer)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/tmp/autopkgtest-lxc.t_q3d0jx/downtmp/autopkgtest_tmp/qiime2/sdk/tests/test_visualizer.py",
line 211, in test_callable_and_async_different_signature
self.assertEqual(parameters, exp_parameters)
AssertionError: Lists differ: [('ints', <Parameter "ints:
collections.Counter">)] != [('ints', <Parameter "ints: IntSequence1 |
IntSequence2">)]
First differing element 0:
('ints', <Parameter "ints: collections.Counter">)
('ints', <Parameter "ints: IntSequence1 | IntSequence2">)
- [('ints', <Parameter "ints: collections.Counter">)]
+ [('ints', <Parameter "ints: IntSequence1 | IntSequence2">)]
======================================================================
FAIL: test_callable_and_async_signature
(qiime2.sdk.tests.test_visualizer.TestVisualizer)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/tmp/autopkgtest-lxc.t_q3d0jx/downtmp/autopkgtest_tmp/qiime2/sdk/tests/test_visualizer.py",
line 193, in test_callable_and_async_signature
self.assertEqual(parameters, exp_parameters)
AssertionError: Lists differ: [('ma[26 chars]ng1: dict">), ('mapping2',
<Parameter "mapping[100 chars]r">)] != [('ma[26 chars]ng1: Mapping">),
('mapping2', <Parameter "mapp[106 chars]r">)]
First differing element 0:
('mapping1', <Parameter "mapping1: dict">)
('mapping1', <Parameter "mapping1: Mapping">)
Diff is 756 characters long. Set self.maxDiff to None to see it.
----------------------------------------------------------------------
Ran 940 tests in 10.542s
FAILED (failures=5)
autopkgtest [01:12:37]: test run-unit-test
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