[Debian-med-packaging] Bug#1006776: pbbam: FTBFS: error: ‘optional’ in namespace ‘std’ does not name a template type

[Sebastian Ramacher]

Source: pbbam
Version: 1.7.0+dfsg-2
Severity: serious
Tags: ftbfs sid bookworm
Justification: fails to build from source (but built successfully in the past)
X-Debbugs-Cc: sramacher at debian.org

pbbam FTBFS:

FAILED: src/libpbbam.so.1.7.0.p/AlignmentPrinter.cpp.o 
c++ -Isrc/libpbbam.so.1.7.0.p -Isrc -I../src -Iinclude -I../include -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wnull-dereference -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbbam.so.1.7.0.p/AlignmentPrinter.cpp.o -MF src/libpbbam.so.1.7.0.p/AlignmentPrinter.cpp.o.d -o src/libpbbam.so.1.7.0.p/AlignmentPrinter.cpp.o -c ../src/AlignmentPrinter.cpp
In file included from /usr/include/pbcopper/data/Read.h:11,
                 from /usr/include/pbcopper/data/MappedRead.h:8,
                 from ../include/pbbam/BamRecord.h:14,
                 from ../include/pbbam/AlignmentPrinter.h:11,
                 from ../src/AlignmentPrinter.cpp:3:
/usr/include/pbcopper/data/ReadId.h:22:10: error: ‘optional’ in namespace ‘std’ does not name a template type
   22 |     std::optional<Interval> ZmwInterval;
      |          ^~~~~~~~
/usr/include/pbcopper/data/ReadId.h:22:5: note: ‘std::optional’ is only available from C++17 onwards
   22 |     std::optional<Interval> ZmwInterval;
      |     ^~~
In file included from /usr/include/pbcopper/data/MappedRead.h:8,
                 from ../include/pbbam/BamRecord.h:14,
                 from ../include/pbbam/AlignmentPrinter.h:11,
                 from ../src/AlignmentPrinter.cpp:3:
/usr/include/pbcopper/data/Read.h:28:49: error: ‘std::optional’ has not been declared
   28 |     Read(Data::ReadId id, std::string seq, std::optional<Frames> pw, std::optional<Frames> ipd,
      |                                                 ^~~~~~~~
/usr/include/pbcopper/data/Read.h:28:57: error: expected ‘,’ or ‘...’ before ‘<’ token
   28 |     Read(Data::ReadId id, std::string seq, std::optional<Frames> pw, std::optional<Frames> ipd,
      |                                                         ^
/usr/include/pbcopper/data/Read.h:40:10: error: ‘optional’ in namespace ‘std’ does not name a template type
   40 |     std::optional<Frames> PulseWidth;
      |          ^~~~~~~~
/usr/include/pbcopper/data/Read.h:40:5: note: ‘std::optional’ is only available from C++17 onwards
   40 |     std::optional<Frames> PulseWidth;
      |     ^~~
/usr/include/pbcopper/data/Read.h:42:10: error: ‘optional’ in namespace ‘std’ does not name a template type
   42 |     std::optional<Frames> IPD;
      |          ^~~~~~~~
/usr/include/pbcopper/data/Read.h:42:5: note: ‘std::optional’ is only available from C++17 onwards
   42 |     std::optional<Frames> IPD;
      |     ^~~
In file included from ../include/pbbam/BamRecord.h:14,
                 from ../include/pbbam/AlignmentPrinter.h:11,
                 from ../src/AlignmentPrinter.cpp:3:
/usr/include/pbcopper/data/MappedRead.h:63:10: error: ‘optional’ in namespace ‘std’ does not name a template type
   63 |     std::optional<Frames> AlignedIPD(
      |          ^~~~~~~~
/usr/include/pbcopper/data/MappedRead.h:63:5: note: ‘std::optional’ is only available from C++17 onwards
   63 |     std::optional<Frames> AlignedIPD(
      |     ^~~
/usr/include/pbcopper/data/MappedRead.h:68:10: error: ‘optional’ in namespace ‘std’ does not name a template type
   68 |     std::optional<Frames> AlignedPulseWidth(
      |          ^~~~~~~~
/usr/include/pbcopper/data/MappedRead.h:68:5: note: ‘std::optional’ is only available from C++17 onwards
   68 |     std::optional<Frames> AlignedPulseWidth(
      |     ^~~


See
https://buildd.debian.org/status/fetch.php?pkg=pbbam&arch=amd64&ver=1.7.0%2Bdfsg-2%2Bb1&stamp=1645916714&raw=0

Cheers
-- 
Sebastian Ramacher
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