[Debian-med-packaging] Bug#1011731: capsule-maven-nextflow: FTBFS: UserSettings.java:183: error: exception PlexusCipherException is never thrown in body of corresponding try statement
Lucas Nussbaum
lucas at debian.org
Thu May 26 07:37:50 BST 2022
Source: capsule-maven-nextflow
Version: 1.0.3.1+dfsg-3
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20220525 ftbfs-bookworm
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> debian/rules binary
> dh binary --buildsystem=gradle --with maven_repo_helper --with javahelper
> dh_update_autotools_config -O--buildsystem=gradle
> dh_autoreconf -O--buildsystem=gradle
> dh_auto_configure -O--buildsystem=gradle
> jh_linkjars -O--buildsystem=gradle
> dh_auto_build -O--buildsystem=gradle
> mkdir -p .gradle/init.d
> cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/
> gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-maven-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=8 jar
> Initialized native services in: /<<PKGBUILDDIR>>/.gradle/native
> To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html.
> Starting process 'Gradle build daemon'. Working directory: /<<PKGBUILDDIR>>/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-11-openjdk-amd64/bin/java -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar --add-opens java.base/java.lang=ALL-UNNAMED -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1
> Successfully started process 'Gradle build daemon'
> An attempt to start the daemon took 0.875 secs.
> The client will now receive all logging from the daemon (pid: 1150806). The daemon log file: /<<PKGBUILDDIR>>/.gradle/daemon/4.4.1/daemon-1150806.out.log
> Daemon will be stopped at the end of the build stopping after processing
> Closing daemon's stdin at end of input.
> The daemon will no longer process any standard input.
> Using 8 worker leases.
> Creating new cache for fileHashes, path /<<PKGBUILDDIR>>/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess at 3740947f
> Creating new cache for resourceHashesCache, path /<<PKGBUILDDIR>>/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess at 3740947f
> Creating new cache for fileHashes, path /<<PKGBUILDDIR>>/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess at ed388aa
> Starting Build
> Compiling initialization script '/<<PKGBUILDDIR>>/.gradle/init.d/init.gradle' using SubsetScriptTransformer.
> Creating new cache for metadata-1.1/results, path /<<PKGBUILDDIR>>/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess at b555180
> Compiling initialization script '/<<PKGBUILDDIR>>/.gradle/init.d/init.gradle' using BuildScriptTransformer.
> Compiling settings file '/<<PKGBUILDDIR>>/settings.gradle' using SubsetScriptTransformer.
> Compiling settings file '/<<PKGBUILDDIR>>/settings.gradle' using BuildScriptTransformer.
> Settings evaluated using settings file '/<<PKGBUILDDIR>>/settings.gradle'.
> Projects loaded. Root project using build file '/<<PKGBUILDDIR>>/build.gradle'.
> Included projects: [root project 'capsule-maven']
> Keep-alive timer started
> Adding Debian repository to project 'capsule-maven'
> Parallel execution is an incubating feature.
> Evaluating root project 'capsule-maven' using build file '/<<PKGBUILDDIR>>/build.gradle'.
> Compiling build file '/<<PKGBUILDDIR>>/build.gradle' using SubsetScriptTransformer.
> Compiling build file '/<<PKGBUILDDIR>>/build.gradle' using BuildScriptTransformer.
> Adding Maven pom generation to project 'capsule-maven'
> Linking the generated javadoc to the system JDK API documentation
> All projects evaluated.
> Selected primary task 'jar' from project :
> Creating new cache for annotation-processors, path /<<PKGBUILDDIR>>/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess at 6f83f3b4
> Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar']
> Creating new cache for resourceHashesCache, path /<<PKGBUILDDIR>>/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess at ed388aa
> Creating new cache for taskHistory, path /<<PKGBUILDDIR>>/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess at 641d275f
> Creating new cache for outputFiles, path /<<PKGBUILDDIR>>/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess at 63a30ae1
> :compileJava (Thread[Task worker for ':' Thread 5,5,main]) started.
> :compileJava
> Putting task artifact state for task ':compileJava' into context took 0.005 secs.
> Creating new cache for metadata-2.36/module-metadata, path /<<PKGBUILDDIR>>/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess at 448d0d4a
> Loading the Maven rules...
> Replacing io.nextflow:capsule:jar:1.0.3.1 -> io.nextflow:capsule:jar:debian
> Ignoring org.eclipse.aether:aether-api:jar:1.1.0
> Ignoring org.eclipse.aether:aether-util:jar:1.1.0
> Ignoring org.eclipse.aether:aether-impl:jar:1.1.0
> Replacing org.eclipse.aether:aether-connector-basic:jar:1.1.0 -> org.apache.maven.resolver:maven-resolver-connector-basic:jar:debian
> Passing through org.apache.maven.resolver:maven-resolver:jar:debian
> Replacing org.eclipse.aether:aether-transport-file:jar:1.1.0 -> org.apache.maven.resolver:maven-resolver-transport-file:jar:debian
> Replacing org.eclipse.aether:aether-transport-http:jar:1.1.0 -> org.apache.maven.resolver:maven-resolver-transport-http:jar:debian
> Replacing org.apache.maven:maven-aether-provider:jar:3.3.9 -> org.apache.maven:maven-aether-provider:jar:3.x
> org.apache.maven:maven-aether-provider:3.x is relocated to org.apache.maven:maven-resolver-provider:3.x. Please update your dependencies.
> Replacing org.apache.maven:maven-model:jar:3.3.9 -> org.apache.maven:maven-model:jar:3.x
> Passing through org.apache.maven:maven:jar:3.x
> Passing through org.apache.maven:maven-parent:jar:debian
> Passing through org.apache:apache:jar:debian
> Replacing org.apache.maven:maven-settings-builder:jar:3.3.9 -> org.apache.maven:maven-settings-builder:jar:3.x
> Replacing org.codehaus.plexus:plexus-container-default:jar:1.6 -> org.codehaus.plexus:plexus-container-default:jar:debian
> Passing through org.codehaus.plexus:plexus-containers:jar:debian
> Ignoring io.takari.aether:takari-local-repository:jar:0.11.2
> Ignoring io.takari:takari-filemanager:jar:0.8.3
> Passing through org.apache.maven.resolver:maven-resolver-api:jar:debian
> Passing through org.apache.maven.resolver:maven-resolver-spi:jar:debian
> Passing through org.apache.maven.resolver:maven-resolver-util:jar:debian
> Passing through org.slf4j:slf4j-api:jar:debian
> Passing through org.slf4j:slf4j-parent:jar:debian
> Passing through org.apache.httpcomponents:httpclient:jar:debian
> Passing through org.apache.httpcomponents:httpcomponents-client:jar:debian
> Passing through org.apache.httpcomponents:httpcore:jar:debian
> Passing through org.apache.httpcomponents:httpcomponents-core:jar:debian
> Passing through org.slf4j:jcl-over-slf4j:jar:debian
> Passing through org.apache.maven:maven-resolver-provider:jar:3.x
> Passing through org.codehaus.plexus:plexus-utils:jar:2.x
> Passing through org.apache.maven:maven-builder-support:jar:3.x
> Passing through javax.inject:javax.inject:jar:debian
> Passing through org.codehaus.plexus:plexus-interpolation:jar:debian
> Passing through org.apache.maven:maven-settings:jar:3.x
> Passing through org.sonatype.plexus:plexus-sec-dispatcher:jar:debian
> org.sonatype.plexus:plexus-sec-dispatcher:debian is relocated to org.codehaus.plexus:plexus-sec-dispatcher:debian. Please update your dependencies.
> Passing through org.codehaus.plexus:plexus-classworlds:jar:debian
> Passing through org.apache.xbean:xbean-reflect:jar:debian
> Passing through commons-codec:commons-codec:jar:debian
> Passing through org.apache.commons:commons-parent:jar:debian
> Passing through org.apache.maven:maven-model-builder:jar:3.x
> Passing through org.apache.maven:maven-repository-metadata:jar:3.x
> Passing through org.apache.maven.resolver:maven-resolver-impl:jar:debian
> Passing through org.codehaus.plexus:plexus-sec-dispatcher:jar:debian
> Passing through org.apache.maven:maven-artifact:jar:3.x
> Passing through org.apache.commons:commons-lang3:jar:debian
> Passing through org.codehaus.plexus:plexus-cipher:jar:debian
> Up-to-date check for task ':compileJava' took 1.15 secs. It is not up-to-date because:
> No history is available.
> All input files are considered out-of-date for incremental task ':compileJava'.
> Compiling with JDK Java compiler API.
> /<<PKGBUILDDIR>>/src/main/java/capsule/UserSettings.java:183: error: exception PlexusCipherException is never thrown in body of corresponding try statement
> } catch (PlexusCipherException e) {
> ^
> Note: Some input files use or override a deprecated API.
> Note: Recompile with -Xlint:deprecation for details.
> Note: Some input files use unchecked or unsafe operations.
> Note: Recompile with -Xlint:unchecked for details.
> 1 error
> :compileJava FAILED
> :compileJava (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 2.121 secs.
>
> FAILURE: Build failed with an exception.
>
> * What went wrong:
> Execution failed for task ':compileJava'.
> > Compilation failed; see the compiler error output for details.
>
> * Try:
> Run with --debug option to get more log output. Run with --scan to get full insights.
>
> * Exception is:
> org.gradle.api.tasks.TaskExecutionException: Execution failed for task ':compileJava'.
> at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:100)
> at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.execute(ExecuteActionsTaskExecuter.java:70)
> at org.gradle.api.internal.tasks.execution.OutputDirectoryCreatingTaskExecuter.execute(OutputDirectoryCreatingTaskExecuter.java:51)
> at org.gradle.api.internal.tasks.execution.SkipUpToDateTaskExecuter.execute(SkipUpToDateTaskExecuter.java:62)
> at org.gradle.api.internal.tasks.execution.ResolveTaskOutputCachingStateExecuter.execute(ResolveTaskOutputCachingStateExecuter.java:54)
> at org.gradle.api.internal.tasks.execution.ValidatingTaskExecuter.execute(ValidatingTaskExecuter.java:60)
> at org.gradle.api.internal.tasks.execution.SkipEmptySourceFilesTaskExecuter.execute(SkipEmptySourceFilesTaskExecuter.java:97)
> at org.gradle.api.internal.tasks.execution.CleanupStaleOutputsExecuter.execute(CleanupStaleOutputsExecuter.java:87)
> at org.gradle.api.internal.tasks.execution.ResolveTaskArtifactStateTaskExecuter.execute(ResolveTaskArtifactStateTaskExecuter.java:52)
> at org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:52)
> at org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:54)
> at org.gradle.api.internal.tasks.execution.ExecuteAtMostOnceTaskExecuter.execute(ExecuteAtMostOnceTaskExecuter.java:43)
> at org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:34)
> at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker$1.run(DefaultTaskGraphExecuter.java:248)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110)
> at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:241)
> at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:230)
> at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.processTask(DefaultTaskPlanExecutor.java:123)
> at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.access$200(DefaultTaskPlanExecutor.java:79)
> at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:104)
> at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:98)
> at org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.execute(DefaultTaskExecutionPlan.java:626)
> at org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.executeWithTask(DefaultTaskExecutionPlan.java:581)
> at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.run(DefaultTaskPlanExecutor.java:98)
> at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63)
> at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46)
> at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55)
> Caused by: org.gradle.api.internal.tasks.compile.CompilationFailedException: Compilation failed; see the compiler error output for details.
> at org.gradle.api.internal.tasks.compile.JdkJavaCompiler.execute(JdkJavaCompiler.java:50)
> at org.gradle.api.internal.tasks.compile.JdkJavaCompiler.execute(JdkJavaCompiler.java:35)
> at org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler.delegateAndHandleErrors(NormalizingJavaCompiler.java:98)
> at org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler.execute(NormalizingJavaCompiler.java:51)
> at org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler.execute(NormalizingJavaCompiler.java:37)
> at org.gradle.api.internal.tasks.compile.CleaningJavaCompilerSupport.execute(CleaningJavaCompilerSupport.java:35)
> at org.gradle.api.internal.tasks.compile.CleaningJavaCompilerSupport.execute(CleaningJavaCompilerSupport.java:25)
> at org.gradle.api.tasks.compile.JavaCompile.performCompilation(JavaCompile.java:207)
> at org.gradle.api.tasks.compile.JavaCompile.compile(JavaCompile.java:192)
> at org.gradle.api.tasks.compile.JavaCompile.compile(JavaCompile.java:124)
> at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:73)
> at org.gradle.api.internal.project.taskfactory.IncrementalTaskAction.doExecute(IncrementalTaskAction.java:46)
> at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:39)
> at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:26)
> at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$1.run(ExecuteActionsTaskExecuter.java:121)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110)
> at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeAction(ExecuteActionsTaskExecuter.java:110)
> at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:92)
> ... 29 more
>
>
> * Get more help at https://help.gradle.org
>
> BUILD FAILED in 6s
> 1 actionable task: 1 executed
> dh_auto_build: error: gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-maven-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=8 jar returned exit code 1
> make: *** [debian/rules:4: binary] Error 25
The full build log is available from:
http://qa-logs.debian.net/2022/05/25/capsule-maven-nextflow_1.0.3.1+dfsg-3_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20220525;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20220525&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
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