[Debian-med-packaging] Bug#1023283: ITP: snippy -- rapid haploid variant calling and core genome alignment

[Andreas Tille]

Package: wnpp
Severity: wishlist

Subject: ITP: snippy -- rapid haploid variant calling and core genome alignment
Package: wnpp
Owner: Andreas Tille <tille at debian.org>
Severity: wishlist

* Package name    : snippy
  Version         : 4.6.0
  Upstream Author : Torsten Seemann
* URL             : https://github.com/tseemann/snippy/
* License         : GPL-2+
  Programming Lang: (C, C++, C#, Perl, Python, etc.)
  Description     : rapid haploid variant calling and core genome alignment
 Snippy finds SNPs between a haploid reference genome and your NGS
 sequence reads. It will find both substitutions (snps) and
 insertions/deletions (indels). It will use as many CPUs as you can give
 it on a single computer (tested to 64 cores). It is designed with speed
 in mind, and produces a consistent set of output files in a single
 folder. It can then take a set of Snippy results using the same
 reference and generate a core SNP alignment (and ultimately a
 phylogenomic tree).

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/snippy