[Debian-med-packaging] Bug#1024835: python-pauvre: ftbfs with biopython 1.80

[Étienne Mollier]

Source: python-pauvre
Version: 0.2.3-1
Severity: important
Tags: ftbfs

Dear Maintainer,

python-pauvre fails its build time test suite when built against
biopython 1.80 in experimental but builds successfully against
biopython 1.79.  The relevant part of the log in case of failure
shows:

	I: pybuild base:240: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build; python3.10 -m unittest discover -v 
	test_normal_plotting_scenario (pauvre.tests.test_synplot.libSeq_test_case)
	This verifies that the LibSeq class is constructed with all of the ... + export PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build
	+ PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build
	+ exec python3 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build/pauvre/pauvre_main.py synplot --aln_dir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build/pauvre/tests/testdata/alignments/ --fileform pdf --gff_paths /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build/pauvre/tests/testdata/gff_files/Bf201706.gff /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build/pauvre/tests/testdata/gff_files/JN392469.gff /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build/pauvre/tests/testdata/gff_files/NC016117.gff --center_on COX1 --gff_labels 'B. forskalii' 'P. bachei' 'M. leidyi'
	Traceback (most recent call last):
	  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build/pauvre/pauvre_main.py", line 636, in <module>
	    main()
	  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build/pauvre/pauvre_main.py", line 630, in main
	    args.func(parser, args)
	  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build/pauvre/pauvre_main.py", line 62, in run_subtool
	    import pauvre.synplot as submodule
	  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build/pauvre/synplot.py", line 46, in <module>
	    import Bio.SubsMat.MatrixInfo as MI
	ModuleNotFoundError: No module named 'Bio.SubsMat'

Have a nice day,  :)
Étienne.

-- System Information:
Debian Release: bookworm/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 6.0.0-4-amd64 (SMP w/12 CPU threads; PREEMPT)
Locale: LANG=C.UTF-8, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
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