[Debian-med-packaging] Bug#1043025: ivar: autopkgtest failure on i386

[Adrian Bunk]

Source: ivar
Version: 1.4.2+dfsg-1
Severity: serious
Tags: patch
Control: block 1037700 by -1

https://ci.debian.net/data/autopkgtest/testing/i386/i/ivar/36393644/log.gz

...
 29s 132,133c132,133
 29s < Consensus_ZI-27_threshold_0_quality_20	130	N	G	0	0	0	7	6	37	1	7	0.000582751	TRUE	NA	NA	NA	NA	NA	NA
 29s < Consensus_ZI-27_threshold_0_quality_20	131	N	A	0	0	0	7	6	37	1	7	0.000582751	TRUE	NA	NA	NA	NA	NA	NA
 29s ---
 29s > Consensus_ZI-27_threshold_0_quality_20	130	N	G	0	0	0	7	6	38	1	7	0.000582751	TRUE	NA	NA	NA	NA	NA	NA
 29s > Consensus_ZI-27_threshold_0_quality_20	131	N	A	0	0	0	7	6	38	1	7	0.000582751	TRUE	NA	NA	NA	NA	NA	NA
 29s 169c169
 29s < Consensus_ZI-27_threshold_0_quality_20	165	N	T	0	0	0	7	6	37	1	7	0.000582751	TRUE	NA	NA	NA	NA	NA	NA
 29s ---
 29s > Consensus_ZI-27_threshold_0_quality_20	165	N	T	0	0	0	7	6	38	1	7	0.000582751	TRUE	NA	NA	NA	NA	NA	NA
 29s 174c174
 29s < Consensus_ZI-27_threshold_0_quality_20	170	N	G	0	0	0	7	6	37	1	7	0.000582751	TRUE	NA	NA	NA	NA	NA	NA
 29s ---
 29s > Consensus_ZI-27_threshold_0_quality_20	170	N	G	0	0	0	7	6	38	1	7	0.000582751	TRUE	NA	NA	NA	NA	NA	NA
 29s 205c205
 29s < Consensus_ZI-27_threshold_0_quality_20	201	N	A	0	0	0	7	6	37	1	7	0.000582751	TRUE	NA	NA	NA	NA	NA	NA
 29s ---
 29s > Consensus_ZI-27_threshold_0_quality_20	201	N	A	0	0	0	7	6	38	1	7	0.000582751	TRUE	NA	NA	NA	NA	NA	NA
 29s 4376c4376
 29s < Consensus_ZI-27_threshold_0_quality_20	7015	N	G	0	0	0	8	1	37	1	8	0.0001554	TRUE	NA	NA	NA	NA	NA	NA
 29s ---
 29s > Consensus_ZI-27_threshold_0_quality_20	7015	N	G	0	0	0	8	1	38	1	8	0.0001554	TRUE	NA	NA	NA	NA	NA	NA
 29s 4379c4379
 29s < Consensus_ZI-27_threshold_0_quality_20	7018	N	G	0	0	0	8	1	36	1	8	0.0001554	TRUE	NA	NA	NA	NA	NA	NA
 29s ---
 29s > Consensus_ZI-27_threshold_0_quality_20	7018	N	G	0	0	0	8	1	37	1	8	0.0001554	TRUE	NA	NA	NA	NA	NA	NA
 29s 4405c4405
 29s < Consensus_ZI-27_threshold_0_quality_20	7044	N	A	0	0	0	8	1	37	1	8	0.0001554	TRUE	NA	NA	NA	NA	NA	NA
 29s ---
 29s > Consensus_ZI-27_threshold_0_quality_20	7044	N	A	0	0	0	8	1	38	1	8	0.0001554	TRUE	NA	NA	NA	NA	NA	NA
 29s 4447c4447
 29s < Consensus_ZI-27_threshold_0_quality_20	7086	N	A	0	0	0	8	2	35	1	8	0.0001554	TRUE	NA	NA	NA	NA	NA	NA
 29s ---
 29s > Consensus_ZI-27_threshold_0_quality_20	7086	N	A	0	0	0	8	2	36	1	8	0.0001554	TRUE	NA	NA	NA	NA	NA	NA
 29s autopkgtest [15:35:51]: test run-unit-test: -----------------------]
 29s run-unit-test        FAIL non-zero exit status 1



The fix is attached.

For background see the first bullet point in the C++ section of
  https://gcc.gnu.org/gcc-13/changes.html
-------------- next part --------------
Description: Remove -std=c++11 to fix autopkgtest failure with gcc 13

--- ivar-1.4.2+dfsg.orig/src/Makefile.am
+++ ivar-1.4.2+dfsg/src/Makefile.am
@@ -1,6 +1,6 @@
 LIBS = -lhts -lz -lpthread
 
-CXXFLAGS += -v -g -std=c++11 -Wall -Wextra -Werror
+CXXFLAGS += -v -g -Wall -Wextra -Werror
 
 # this lists the binaries to produce, the (non-PHONY, binary) targets in
 # the previous manual Makefile
--- ivar-1.4.2+dfsg.orig/tests/Makefile.am
+++ ivar-1.4.2+dfsg/tests/Makefile.am
@@ -1,6 +1,6 @@
 LIBS = -lhts -lz -lpthread
 
-CXXFLAGS += -g -std=c++11 -Wall -Wextra -Werror
+CXXFLAGS += -g -Wall -Wextra -Werror
 
 TESTS = check_primer_trim check_trim check_quality_trim check_consensus check_allele_depth check_consensus_threshold check_consensus_min_depth check_consensus_seq_id check_primer_bed check_getmasked check_removereads check_variants check_common_variants check_unpaired_trim check_primer_trim_edge_cases check_isize_trim check_interval_tree check_amplicon_search check_consensus_min_insert_threshold
 check_PROGRAMS = check_primer_trim check_trim check_quality_trim check_consensus check_allele_depth check_consensus_threshold check_consensus_min_depth check_consensus_seq_id check_primer_bed check_getmasked check_removereads check_variants check_common_variants check_unpaired_trim check_primer_trim_edge_cases check_isize_trim check_interval_tree check_amplicon_search check_consensus_min_insert_threshold