[Debian-med-packaging] Bug#1043693: abpoa: Fails to build source after successful build

Sun Aug 13 14:17:53 BST 2023

Source: abpoa
Version: 1.4.1-3
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild

Hi,

This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).

This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.

More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild

Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S
> -----------------------------------------------------------------------------------------------------------------
> 
> dpkg-buildpackage: info: source package abpoa
> dpkg-buildpackage: info: source version 1.4.1-3
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Ã‰tienne Mollier <emollier at debian.org>
>  dpkg-source --before-build .
>  debian/rules clean
> dh clean --with=python3 --buildsystem=pybuild
>    dh_auto_clean -O--buildsystem=pybuild
> I: pybuild base:275: python3.11 setup.py clean 
> /<<PKGBUILDDIR>>/setup.py:6: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
>   from distutils.core import setup
> /usr/lib/python3.11/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long_description_content_type'
>   warnings.warn(msg)
> /usr/lib/python3.11/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires'
>   warnings.warn(msg)
> running clean
> removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyabpoa/build' (and everything under it)
> 'build/bdist.linux-x86_64' does not exist -- can't clean it
> 'build/scripts-3.11' does not exist -- can't clean it
>    dh_autoreconf_clean -O--buildsystem=pybuild
>    dh_clean -O--buildsystem=pybuild
>  dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building abpoa using existing ./abpoa_1.4.1.orig.tar.gz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: warning: executable mode 0755 of 'bin/abpoa' will not be represented in diff
> dpkg-source: error: cannot represent change to bin/abpoa.avx: binary file contents changed
> dpkg-source: error: add bin/abpoa.avx in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'bin/abpoa.avx' will not be represented in diff
> dpkg-source: error: cannot represent change to bin/abpoa.avx2: binary file contents changed
> dpkg-source: error: add bin/abpoa.avx2 in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'bin/abpoa.avx2' will not be represented in diff
> dpkg-source: error: cannot represent change to bin/abpoa.generic: binary file contents changed
> dpkg-source: error: add bin/abpoa.generic in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'bin/abpoa.generic' will not be represented in diff
> dpkg-source: error: cannot represent change to bin/abpoa.sse3: binary file contents changed
> dpkg-source: error: add bin/abpoa.sse3 in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'bin/abpoa.sse3' will not be represented in diff
> dpkg-source: error: cannot represent change to bin/abpoa.sse4.1: binary file contents changed
> dpkg-source: error: add bin/abpoa.sse4.1 in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'bin/abpoa.sse4.1' will not be represented in diff
> dpkg-source: error: cannot represent change to bin/abpoa.ssse3: binary file contents changed
> dpkg-source: error: add bin/abpoa.ssse3 in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'bin/abpoa.ssse3' will not be represented in diff
> dpkg-source: error: cannot represent change to lib/libabpoa.a: binary file contents changed
> dpkg-source: error: add lib/libabpoa.a in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to poa.png: binary file contents changed
> dpkg-source: error: add poa.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/abpoa.o: binary file contents changed
> dpkg-source: error: add src/abpoa.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/abpoa_align.o: binary file contents changed
> dpkg-source: error: add src/abpoa_align.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/abpoa_graph.o: binary file contents changed
> dpkg-source: error: add src/abpoa_graph.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/abpoa_output.o: binary file contents changed
> dpkg-source: error: add src/abpoa_output.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/abpoa_plot.o: binary file contents changed
> dpkg-source: error: add src/abpoa_plot.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/abpoa_seed.o: binary file contents changed
> dpkg-source: error: add src/abpoa_seed.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/abpoa_seq.o: binary file contents changed
> dpkg-source: error: add src/abpoa_seq.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/kalloc.o: binary file contents changed
> dpkg-source: error: add src/kalloc.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/kstring.o: binary file contents changed
> dpkg-source: error: add src/kstring.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/simd_abpoa_align.o: binary file contents changed
> dpkg-source: error: add src/simd_abpoa_align.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/simd_check.o: binary file contents changed
> dpkg-source: error: add src/simd_check.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/utils.o: binary file contents changed
> dpkg-source: error: add src/utils.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: unrepresentable changes to source
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1
> 
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S' failed to run.

The full build log is available from:
http://qa-logs.debian.net/2023/08/13/abpoa_1.4.1-3_unstable.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.