[Debian-med-packaging] Bug#1045212: libcolt-free-java: Fails to build source after successful build

Lucas Nussbaum lucas at debian.org
Sun Aug 13 20:20:51 BST 2023 

Source: libcolt-free-java
Version: 1.2.0+dfsg-7
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild

Hi,

This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).

This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.

More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild

Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S
> ----------------------------------------------------------------------------------------------------------------------------------------------
> 
> dpkg-buildpackage: info: source package libcolt-free-java
> dpkg-buildpackage: info: source version 1.2.0+dfsg-7
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Andreas Tille <tille at debian.org>
>  dpkg-source --before-build .
>  fakeroot debian/rules clean
> dh clean --with javahelper
>    dh_auto_clean
> 	ant clean
> Buildfile: /<<PKGBUILDDIR>>/build.xml
> 
> clean:
> 
> BUILD SUCCESSFUL
> Total time: 0 seconds
>    jh_clean
>    debian/rules override_dh_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_clean
> rm -rf build
> rm -rf lib/*.jar
> #This will deliberately fail if lib contains anything but jars
> ! [ -d lib ] || rmdir lib
> rm -rf src/hep/aida
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
>  dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building libcolt-free-java using existing ./libcolt-free-java_1.2.0+dfsg.orig.tar.xz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: warning: ignoring deletion of directory lib
> dpkg-source: info: local changes detected, the modified files are:
>  libcolt-free-java-1.2.0+dfsg/src/cern/clhep/PhysicalConstants.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/clhep/Units.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/Arrays.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/PersistentObject.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/Swapper.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/Timer.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/bitvector/BitMatrix.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/bitvector/BitVector.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/bitvector/QuickBitVector.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/buffer/DoubleBuffer.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/buffer/DoubleBuffer2D.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/buffer/DoubleBuffer2DConsumer.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/buffer/DoubleBuffer3D.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/buffer/DoubleBuffer3DConsumer.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/buffer/DoubleBufferConsumer.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/buffer/IntBuffer.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/buffer/IntBuffer2D.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/buffer/IntBuffer2DConsumer.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/buffer/IntBuffer3D.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/buffer/IntBuffer3DConsumer.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/buffer/IntBufferConsumer.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/buffer/ObjectBuffer.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/buffer/ObjectBufferConsumer.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/BooleanProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/ByteComparator.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/ByteProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/CharComparator.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/CharProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/Double27Function.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/Double5Function.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/Double9Function.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/DoubleComparator.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/DoubleDoubleFunction.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/DoubleDoubleProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/DoubleFunction.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/DoubleIntProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/DoubleProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/FloatComparator.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/FloatProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/IntComparator.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/IntDoubleFunction.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/IntDoubleProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/IntFunction.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/IntIntDoubleFunction.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/IntIntDoubleProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/IntIntFunction.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/IntIntIntProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/IntIntProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/IntObjectProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/IntProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/LongComparator.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/LongObjectProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/LongProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/ObjectFunction.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/ObjectObjectFunction.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/ObjectProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/ShortComparator.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/function/ShortProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/list/AbstractCollection.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/list/AbstractList.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/list/DistinctNumberList.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/list/SimpleLongArrayList.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/map/AbstractMap.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/map/Benchmark.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/map/HashFunctions.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/matrix/DoubleMatrix1DProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/matrix/DoubleMatrix2DProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/matrix/DoubleMatrix3DProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/matrix/ObjectMatrix1DProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/matrix/ObjectMatrix2DProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/matrix/ObjectMatrix3DProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/matrix/bench/BenchmarkKernel.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/matrix/bench/Double2DProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/matrix/bench/TimerProcedure.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/matrix/impl/AbstractMatrix.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/matrix/impl/AbstractMatrix1D.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/matrix/impl/AbstractMatrix2D.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/matrix/impl/AbstractMatrix3D.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/matrix/impl/Former.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/matrix/linalg/LUDecompositionQuick.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/matrix/linalg/Matrix2DMatrix2DFunction.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/colt/matrix/linalg/Property.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/math/Algebraic.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/math/Arithmetic.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/math/Bessel.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/math/Complex.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/math/Constants.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/math/Elliptic.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/math/Exponential.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/math/ExponentialIntegral.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/math/Misc.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/math/Mult.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/math/NumericalIntegration.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/math/PlusMult.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/math/Polynomial.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/random/AbstractContinousDistribution.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/random/AbstractDiscreteDistribution.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/random/Stack.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/random/engine/RandomSeedGenerator.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/random/engine/RandomSeedTable.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/stat/Gamma.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/stat/Probability.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/stat/quantile/Buffer.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/stat/quantile/BufferSet.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/stat/quantile/DoubleBufferSet.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/stat/quantile/DoubleQuantileFinder.java
>  libcolt-free-java-1.2.0+dfsg/src/cern/jet/stat/quantile/QuantileCalc.java
> dpkg-source: error: aborting due to unexpected upstream changes, see /tmp/libcolt-free-java_1.2.0+dfsg-7.diff.Nfnp9R
> dpkg-source: info: Hint: make sure the version in debian/changelog matches the unpacked source tree
> dpkg-source: info: you can integrate the local changes with dpkg-source --commit
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2
> 
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S' failed to run.


The full build log is available from:
http://qa-logs.debian.net/2023/08/13/libcolt-free-java_1.2.0+dfsg-7_unstable.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.

More information about the Debian-med-packaging mailing list