[Debian-med-packaging] Bug#1046227: libgo-perl: Fails to build source after successful build

Lucas Nussbaum lucas at debian.org
Sun Aug 13 20:20:52 BST 2023 

Source: libgo-perl
Version: 0.15-9
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild

Hi,

This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).

This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.

More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild

Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S
> --------------------------------------------------------------------------------------------------------------------------
> 
> dpkg-buildpackage: info: source package libgo-perl
> dpkg-buildpackage: info: source version 0.15-9
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Andreas Tille <tille at debian.org>
>  dpkg-source --before-build .
>  debian/rules clean
> dh clean
>    dh_auto_clean
> 	make -j8 distclean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> rm -f \
>   blib/script/go-apply-xslt blib/script/go-dag-summary.pl \
>   blib/script/go-export-graph.pl blib/script/go-export-prolog.pl \
>   blib/script/go-filter-subset.pl blib/script/go-show-assocs-by-node.pl \
>   blib/script/go-show-paths-to-root.pl blib/script/go2chadoxml \
>   blib/script/go2error_report blib/script/go2fmt.pl \
>   blib/script/go2godb_prestore blib/script/go2obo \
>   blib/script/go2obo_html blib/script/go2obo_text \
>   blib/script/go2obo_xml blib/script/go2owl \
>   blib/script/go2pathlist blib/script/go2prolog \
>   blib/script/go2rdf blib/script/go2rdfxml \
>   blib/script/go2summary blib/script/go2sxpr \
>   blib/script/go2tbl blib/script/go2text_html \
>   blib/script/go2xml blib/script/map2slim 
> "/usr/bin/perl" "-MExtUtils::Manifest=fullcheck" -e fullcheck
> rm -f \
>   GO.bso GO.def \
>   GO.exp GO.x \
>    blib/arch/auto/GO/extralibs.all \
>   blib/arch/auto/GO/extralibs.ld Makefile.aperl \
>   *.a *.o \
>   *perl.core MYMETA.json \
>   MYMETA.yml blibdirs.ts \
>   core core.*perl.*.? \
>   core.[0-9] core.[0-9][0-9] \
>   core.[0-9][0-9][0-9] core.[0-9][0-9][0-9][0-9] \
>   core.[0-9][0-9][0-9][0-9][0-9] libGO.def \
>   mon.out perl \
>   perl perl.exe \
>   perlmain.c pm_to_blib \
>   pm_to_blib.ts so_locations \
>   tmon.out 
> rm -rf \
>   blib go-perl-0.15.tar.gz 
> mv Makefile Makefile.old > /dev/null 2>&1
> rm -f \
>   Makefile Makefile.old 
> rm -rf \
>   go-perl-0.15 
> Not in MANIFEST: .pc/.quilt_patches
> Not in MANIFEST: .pc/.quilt_series
> Not in MANIFEST: .pc/.version
> Not in MANIFEST: .pc/applied-patches
> Not in MANIFEST: .pc/fix-missing-manpages/scripts/go-apply-xslt
> Not in MANIFEST: .pc/fix-missing-manpages/scripts/go-export-prolog.pl
> Not in MANIFEST: .pc/fix-missing-manpages/scripts/go2error_report
> Not in MANIFEST: .pc/fix-pod.patch/GO/Parser.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Handlers/base.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Handlers/go_def.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Handlers/go_ont.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Handlers/go_xref.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Handlers/godb_prestore.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Handlers/obo_godb_flat.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Handlers/obo_html.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Handlers/obo_text.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Handlers/owl_to_obo_text.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Handlers/summary.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Handlers/tbl.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Handlers/text_html.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Handlers/xsl_base.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/IO/Dotty.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/IO/go_assoc.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/IO/ObanOwl.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/IO/OBDXML.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/IO/RDFXML.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/Association.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/CrossProduct.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/DB.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/Evidence.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/GeneProduct.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/GraphIterator.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/LogicalDefinition.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/Modification.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/Ontology.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/Path.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/Property.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/Relationship.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/Restriction.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/Root.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/Seq.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/Species.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/Term.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/TreeIterator.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Model/Xref.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/ObjCache.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Parsers/locuslink_parser.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Parsers/ncbi_taxonomy_parser.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Parsers/obj_emitter.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/GO/Utils.pm
> Not in MANIFEST: .pc/fix-whatis-entries.patch/scripts/go-dag-summary.pl
> Not in MANIFEST: .pc/fix-whatis-entries.patch/scripts/go-export-graph.pl
> Not in MANIFEST: .pc/fix-whatis-entries.patch/scripts/go2fmt.pl
> Not in MANIFEST: .pc/fix_hash_in_go_io_dotty.patch/GO/IO/Dotty.pm
> Not in MANIFEST: .pc/fix_test_xsltproc/GO/xsl/oboxml_to_owl.xsl
> Not in MANIFEST: .pc/spelling.patch/GO/Handlers/obj.pm
> Not in MANIFEST: .pc/spelling.patch/GO/Model/Association.pm
> Not in MANIFEST: .pc/spelling.patch/GO/Model/Evidence.pm
> Not in MANIFEST: .pc/spelling.patch/GO/Model/Graph.pm
> Not in MANIFEST: .pc/spelling2.patch/go-perl.pod
> Not in MANIFEST: .pc/spelling2.patch/GO/Model/Evidence.pm
> Not in MANIFEST: .pc/spelling2.patch/GO/Model/GeneProduct.pm
> Not in MANIFEST: .pc/spelling2.patch/GO/Model/GraphIterator.pm
> Not in MANIFEST: .pc/spelling2.patch/GO/Model/Root.pm
> Not in MANIFEST: .pc/spelling2.patch/GO/Model/Seq.pm
> Not in MANIFEST: .pc/spelling2.patch/GO/Model/Species.pm
> Not in MANIFEST: .pc/spelling2.patch/GO/Model/Term.pm
> Not in MANIFEST: .pc/spelling2.patch/GO/Model/Xref.pm
> Not in MANIFEST: .pc/spelling2.patch/GO/Parser.pm
> Not in MANIFEST: debian/.debhelper/generated/libgo-perl/dh_installchangelogs.dch.trimmed
> Not in MANIFEST: debian/.debhelper/generated/libgo-perl/installed-by-dh_install
> Not in MANIFEST: debian/.debhelper/generated/libgo-perl/installed-by-dh_installdocs
> Not in MANIFEST: debian/.debhelper/generated/libgo-perl/installed-by-dh_installman
> Not in MANIFEST: debian/changelog
> Not in MANIFEST: debian/control
> Not in MANIFEST: debian/copyright
> Not in MANIFEST: debian/debhelper-build-stamp
> Not in MANIFEST: debian/docs
> Not in MANIFEST: debian/files
> Not in MANIFEST: debian/libgo-perl.debhelper.log
> Not in MANIFEST: debian/libgo-perl.substvars
> Not in MANIFEST: debian/libgo-perl/DEBIAN/control
> Not in MANIFEST: debian/libgo-perl/DEBIAN/md5sums
> Not in MANIFEST: debian/libgo-perl/usr/bin/go-apply-xslt
> Not in MANIFEST: debian/libgo-perl/usr/bin/go-dag-summary
> Not in MANIFEST: debian/libgo-perl/usr/bin/go-export-graph
> Not in MANIFEST: debian/libgo-perl/usr/bin/go-export-prolog
> Not in MANIFEST: debian/libgo-perl/usr/bin/go-filter-subset
> Not in MANIFEST: debian/libgo-perl/usr/bin/go-show-assocs-by-node
> Not in MANIFEST: debian/libgo-perl/usr/bin/go-show-paths-to-root
> Not in MANIFEST: debian/libgo-perl/usr/bin/go2chadoxml
> Not in MANIFEST: debian/libgo-perl/usr/bin/go2error_report
> Not in MANIFEST: debian/libgo-perl/usr/bin/go2fmt
> Not in MANIFEST: debian/libgo-perl/usr/bin/go2godb_prestore
> Not in MANIFEST: debian/libgo-perl/usr/bin/go2obo
> Not in MANIFEST: debian/libgo-perl/usr/bin/go2obo_html
> Not in MANIFEST: debian/libgo-perl/usr/bin/go2obo_text
> Not in MANIFEST: debian/libgo-perl/usr/bin/go2obo_xml
> Not in MANIFEST: debian/libgo-perl/usr/bin/go2owl
> Not in MANIFEST: debian/libgo-perl/usr/bin/go2pathlist
> Not in MANIFEST: debian/libgo-perl/usr/bin/go2prolog
> Not in MANIFEST: debian/libgo-perl/usr/bin/go2rdf
> Not in MANIFEST: debian/libgo-perl/usr/bin/go2rdfxml
> Not in MANIFEST: debian/libgo-perl/usr/bin/go2summary
> Not in MANIFEST: debian/libgo-perl/usr/bin/go2sxpr
> Not in MANIFEST: debian/libgo-perl/usr/bin/go2tbl
> Not in MANIFEST: debian/libgo-perl/usr/bin/go2text_html
> Not in MANIFEST: debian/libgo-perl/usr/bin/go2xml
> Not in MANIFEST: debian/libgo-perl/usr/bin/map2slim
> Not in MANIFEST: debian/libgo-perl/usr/share/doc/libgo-perl/changelog.Debian.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/doc/libgo-perl/changelog.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/doc/libgo-perl/copyright
> Not in MANIFEST: debian/libgo-perl/usr/share/doc/libgo-perl/README.test
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go-apply-xslt.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go-dag-summary.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go-export-graph.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go-export-prolog.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go-filter-subset.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go-show-assocs-by-node.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go-show-paths-to-root.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go2chadoxml.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go2error_report.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go2fmt.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go2godb_prestore.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go2obo.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go2obo_html.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go2obo_text.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go2obo_xml.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go2owl.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go2pathlist.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go2prolog.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go2rdf.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go2rdfxml.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go2summary.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go2sxpr.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go2tbl.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go2text_html.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/go2xml.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man1/map2slim.1p.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/go-perl.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Basic.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_def.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_ont.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_xref.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Handlers::godb_prestore.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Handlers::obj.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_godb_flat.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_html.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_text.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl_to_obo_text.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Handlers::summary.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Handlers::tbl.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Handlers::text_html.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Handlers::xsl_base.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::IO::Analysis.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::IO::Blast.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::IO::Dotty.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::IO::go_assoc.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::IO::ObanOwl.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::IO::OBDXML.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::IO::RDFXML.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Metadata::Panther.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::Association.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::CrossProduct.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::DB.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::Evidence.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::GeneProduct.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::Graph.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::GraphIterator.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::GraphNodeInstance.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::LogicalDefinition.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::Modification.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::Ontology.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::Path.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::Property.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::Relationship.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::Restriction.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::Root.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::Seq.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::Species.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::Term.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::TreeIterator.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Model::Xref.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::ObjCache.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::ObjFactory.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::base_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::generic_tagval_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_assoc_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_def_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ids_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ont_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_xref_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::locuslink_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::mesh_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::mgi_assoc_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxon_names_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxonomy_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::obj_emitter.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_text_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_xml_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::owl_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::ParserEventNames.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::references_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::refgenomes_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::unknown_format_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Parsers::xrf_abbs_parser.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/man/man3/GO::Utils.3pm.gz
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/go-perl.pod
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Basic.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/rdf.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Metadata/Panther.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/Utils.pm
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl
> Not in MANIFEST: debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl
> Not in MANIFEST: debian/links
> Not in MANIFEST: debian/patches/fix-missing-manpages
> Not in MANIFEST: debian/patches/fix-pod.patch
> Not in MANIFEST: debian/patches/fix-whatis-entries.patch
> Not in MANIFEST: debian/patches/fix_hash_in_go_io_dotty.patch
> Not in MANIFEST: debian/patches/fix_test_xsltproc
> Not in MANIFEST: debian/patches/series
> Not in MANIFEST: debian/patches/spelling.patch
> Not in MANIFEST: debian/patches/spelling2.patch
> Not in MANIFEST: debian/README.source
> Not in MANIFEST: debian/README.test
> Not in MANIFEST: debian/rules
> Not in MANIFEST: debian/salsa-ci.yml
> Not in MANIFEST: debian/source/format
> Not in MANIFEST: debian/tests/pkg-perl/syntax-skip
> Not in MANIFEST: debian/watch
> Not in MANIFEST: t/data/go-truncated.obo.obo_xml
> Not in MANIFEST: t/data/go-truncated.obo.obo_xml.obo_text
> Not in MANIFEST: t/data/GO.defs.obo_xml
> Not in MANIFEST: t/data/GO.defs.obo_xml.go_def
> Not in MANIFEST: t/data/sample.ncbi_taxonomy.obo
> Not in MANIFEST: t/data/test-function.dat.obo_text
> Not in MANIFEST: t/data/test-function.dat.obo_text.obo_xml
> Not in MANIFEST: t/data/test-function.dat.obo_text.obo_xml.go_ont
> Not in MANIFEST: t/data/test-function.dat.obo_text.pathlist
> Not in MANIFEST: t/data/test-function.dat.obo_text.prolog
> Not in MANIFEST: t/data/test-function.dat.obo_text.rdf
> Not in MANIFEST: t/data/test-function.dat.obo_xml
> Not in MANIFEST: t/data/test-function.dat.pathlist
> Not in MANIFEST: t/data/test-function.dat.prolog
> Not in MANIFEST: t/data/test-function.dat.rdf
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
>    dh_clean
>  dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building libgo-perl using existing ./libgo-perl_0.15.orig.tar.gz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: warning: file libgo-perl-0.15/t/data/test-function.dat.obo_text.rdf has no final newline (either original or modified version)
> dpkg-source: warning: file libgo-perl-0.15/t/data/test-function.dat.rdf has no final newline (either original or modified version)
> dpkg-source: info: local changes detected, the modified files are:
>  libgo-perl-0.15/t/data/GO.defs.obo_xml
>  libgo-perl-0.15/t/data/GO.defs.obo_xml.go_def
>  libgo-perl-0.15/t/data/go-truncated.obo.obo_xml
>  libgo-perl-0.15/t/data/go-truncated.obo.obo_xml.obo_text
>  libgo-perl-0.15/t/data/sample.ncbi_taxonomy.obo
>  libgo-perl-0.15/t/data/test-function.dat.obo_text
>  libgo-perl-0.15/t/data/test-function.dat.obo_text.obo_xml
>  libgo-perl-0.15/t/data/test-function.dat.obo_text.obo_xml.go_ont
>  libgo-perl-0.15/t/data/test-function.dat.obo_text.pathlist
>  libgo-perl-0.15/t/data/test-function.dat.obo_text.prolog
>  libgo-perl-0.15/t/data/test-function.dat.obo_text.rdf
>  libgo-perl-0.15/t/data/test-function.dat.obo_xml
>  libgo-perl-0.15/t/data/test-function.dat.pathlist
>  libgo-perl-0.15/t/data/test-function.dat.prolog
>  libgo-perl-0.15/t/data/test-function.dat.rdf
> dpkg-source: error: aborting due to unexpected upstream changes, see /tmp/libgo-perl_0.15-9.diff.AYCepf
> dpkg-source: info: Hint: make sure the version in debian/changelog matches the unpacked source tree
> dpkg-source: info: you can integrate the local changes with dpkg-source --commit
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2
> 
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S' failed to run.


The full build log is available from:
http://qa-logs.debian.net/2023/08/13/libgo-perl_0.15-9_unstable.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.

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