[Debian-med-packaging] Bug#1047870: obitools: Fails to build source after successful build

[Lucas Nussbaum]

Source: obitools
Version: 1.2.13+dfsg-5
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild

Hi,

This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).

This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.

More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild

Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S
> -----------------------------------------------------------------------------------------------------------------------------
> 
> dpkg-buildpackage: info: source package obitools
> dpkg-buildpackage: info: source version 1.2.13+dfsg-5
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Nilesh Patra <nilesh at debian.org>
>  dpkg-source --before-build .
>  debian/rules clean
> dh clean  --with python3 --buildsystem=pybuild
>    debian/rules override_dh_auto_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> # skip it
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
>    dh_autoreconf_clean -O--buildsystem=pybuild
>    debian/rules override_dh_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_clean
> rm -rf build
> rm -f doc/sphinx/build_dir.txt
> rm -rf src/OBITools.egg-info
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
>  dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building obitools using existing ./obitools_1.2.13+dfsg.orig.tar.xz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/__pycache__/SVGdraw.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/__pycache__/SVGdraw.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/__pycache__/gzip.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/__pycache__/gzip.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/__pycache__/zipfile.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/__pycache__/zipfile.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/_obitools.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/_obitools.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/_obitools.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/align/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/align/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/align/_assemble.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/align/_assemble.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/align/_assemble.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/align/_codonnws.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/align/_codonnws.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/align/_codonnws.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/align/_dynamic.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/align/_dynamic.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/align/_dynamic.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/align/_freeendgap.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/align/_freeendgap.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/align/_freeendgap.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/align/_freeendgapfm.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/align/_freeendgapfm.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/align/_freeendgapfm.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/align/_gprofilenws.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/align/_gprofilenws.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/align/_gprofilenws.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/align/_lcs.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/align/_lcs.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/align/_lcs.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/align/_nws.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/align/_nws.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/align/_nws.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/align/_nwsdnabyprot.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/align/_nwsdnabyprot.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/align/_nwsdnabyprot.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/align/_profilenws.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/align/_profilenws.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/align/_profilenws.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/align/_qsassemble.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/align/_qsassemble.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/align/_qsassemble.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/align/_qsrassemble.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/align/_qsrassemble.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/align/_qsrassemble.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/align/_rassemble.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/align/_rassemble.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/align/_rassemble.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/align/_upperbond.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/align/_upperbond.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/align/_upperbond.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/align/homopolymere.py has no final newline (either original or modified version)
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/alignment/__init__.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/alignment/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/alignment/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/alignment/ace.py has no final newline (either original or modified version)
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/barcodecoverage/__init__.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/barcodecoverage/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/barcodecoverage/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/blast/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/blast/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/carto/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/carto/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: newly created empty file '.pybuild/cpython3_3.11_obitools/build/obitools/decorator.py' will not be represented in diff
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/distances/__init__.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/distances/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/distances/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/distances/observed.py has no final newline (either original or modified version)
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/dnahash/__init__.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/dnahash/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/dnahash/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: newly created empty file '.pybuild/cpython3_3.11_obitools/build/obitools/ecobarcode/__init__.py' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/ecobarcode/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/ecobarcode/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecobarcode/databases.py has no final newline (either original or modified version)
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/__init__.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/__pycache__/annotation.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/__pycache__/annotation.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/__pycache__/options.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/__pycache__/options.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/__pycache__/sequence.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/__pycache__/sequence.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/__pycache__/taxonomy.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/__pycache__/taxonomy.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecopcr/options.py has no final newline (either original or modified version)
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecotag/__init__.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/ecotag/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/ecotag/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/ecotag/parser.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/eutils/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/eutils/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/fasta/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/fasta/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/fasta/_fasta.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/fasta/_fasta.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/fasta/_fasta.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/fastq/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/fastq/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/fastq/_fastq.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/fastq/_fastq.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/fastq/_fastq.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/fnaqual/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/fnaqual/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/fnaqual/__pycache__/fasta.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/fnaqual/__pycache__/fasta.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/fnaqual/__pycache__/quality.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/fnaqual/__pycache__/quality.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fnaqual/fasta.py has no final newline (either original or modified version)
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/fnaqual/quality.py has no final newline (either original or modified version)
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/__init__.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/format/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/format/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/format/__pycache__/options.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/format/__pycache__/options.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/format/_format.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/format/_format.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/format/_format.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/format/genericparser/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/format/genericparser/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/format/genericparser/_genericparser.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/format/genericparser/_genericparser.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/format/genericparser/_genericparser.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: warning: newly created empty file '.pybuild/cpython3_3.11_obitools/build/obitools/format/ontology/__init__.py' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/format/ontology/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/format/ontology/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/format/options.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__pycache__/embl.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__pycache__/embl.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__pycache__/fasta.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__pycache__/fasta.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__pycache__/fastq.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__pycache__/fastq.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__pycache__/fnaqual.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__pycache__/fnaqual.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__pycache__/genbank.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/format/sequence/__pycache__/genbank.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: newly created empty file '.pybuild/cpython3_3.11_obitools/build/obitools/goa/__init__.py' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/goa/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/goa/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/graph/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/graph/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/graph/__pycache__/dag.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/graph/__pycache__/dag.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/graph/__pycache__/rootedtree.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/graph/__pycache__/rootedtree.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/graph/__pycache__/tree.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/graph/__pycache__/tree.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: newly created empty file '.pybuild/cpython3_3.11_obitools/build/obitools/graph/algorithms/__init__.py' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/graph/algorithms/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/graph/algorithms/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/graph/algorithms/__pycache__/component.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/graph/algorithms/__pycache__/component.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/algorithms/component.py has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file '.pybuild/cpython3_3.11_obitools/build/obitools/graph/layout/__init__.py' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/graph/layout/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/graph/layout/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: newly created empty file '.pybuild/cpython3_3.11_obitools/build/obitools/graph/layout/radialtree.py' will not be represented in diff
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/graph/tree.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/interactive/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/interactive/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/location/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/location/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/location/__pycache__/feature.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/location/__pycache__/feature.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/location/feature.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/metabarcoding/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/metabarcoding/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obischemas/__init__.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/obischemas/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/obischemas/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/obischemas/kb/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/obischemas/kb/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obischemas/options.py has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file '.pybuild/cpython3_3.11_obitools/build/obitools/obo/__init__.py' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/obo/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/obo/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: newly created empty file '.pybuild/cpython3_3.11_obitools/build/obitools/obo/go/__init__.py' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/obo/go/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/obo/go/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/obo/parser.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/options/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/options/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/options/_bioseqfilter.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/options/_bioseqfilter.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/options/_bioseqfilter.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/options/_options.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/options/_options.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/options/_options.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/options/bioseqedittag.py has no final newline (either original or modified version)
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/options/bioseqfilter.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/parallel/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/parallel/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/parallel/jobqueue.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/phylogeny/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/phylogeny/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: newly created empty file '.pybuild/cpython3_3.11_obitools/build/obitools/profile/__init__.py' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/profile/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/profile/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/profile/_profile.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/profile/_profile.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/profile/_profile.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/seqdb/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/seqdb/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: newly created empty file '.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/blastdb/__init__.py' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/seqdb/blastdb/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/seqdb/blastdb/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/seqdb/embl/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/seqdb/embl/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/seqdb/embl/__pycache__/parser.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/seqdb/embl/__pycache__/parser.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/seqdb/genbank/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/seqdb/genbank/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/seqdb/genbank/__pycache__/parser.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/seqdb/genbank/__pycache__/parser.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/seqdb/genbank/parser.py has no final newline (either original or modified version)
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/sequenceencoder/__init__.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/sequenceencoder/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/sequenceencoder/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/solexa/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/solexa/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: newly created empty file '.pybuild/cpython3_3.11_obitools/build/obitools/statistics/__init__.py' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/statistics/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/statistics/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/statistics/hypergeometric.py has no final newline (either original or modified version)
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/statistics/noncentralhypergeo.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/table/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/table/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/table/csv.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/tagmatcher/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/tagmatcher/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/thermo/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/thermo/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: newly created empty file '.pybuild/cpython3_3.11_obitools/build/obitools/tools/__init__.py' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/tools/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/tools/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/tools/_solexapairend.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/tools/_solexapairend.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/tools/_solexapairend.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/tree/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/tree/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tree/dot.py has no final newline (either original or modified version)
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tree/layout.py has no final newline (either original or modified version)
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tree/svg.py has no final newline (either original or modified version)
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/tree/unrooted.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/unit/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/unit/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/unit/obitools/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/unit/obitools/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/utils/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/utils/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/utils/__pycache__/bioseq.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/utils/__pycache__/bioseq.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/utils/__pycache__/iterator.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/utils/__pycache__/iterator.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/utils/_utils.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/utils/_utils.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/utils/_utils.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/utils/bioseq.py has no final newline (either original or modified version)
> dpkg-source: warning: file obitools-1.2.13+dfsg/.pybuild/cpython3_3.11_obitools/build/obitools/utils/iterator.py has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/word/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/word/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/word/_binary.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/word/_binary.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/word/_binary.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11_obitools/build/obitools/word/_readindex.cpython-311-x86_64-linux-gnu.so: binary file contents changed
> dpkg-source: error: add .pybuild/cpython3_3.11_obitools/build/obitools/word/_readindex.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11_obitools/build/obitools/word/_readindex.cpython-311-x86_64-linux-gnu.so' will not be represented in diff
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/__pycache__/core.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/__pycache__/core.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/__pycache__/dist.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/__pycache__/dist.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/command/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/command/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/command/__pycache__/build.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/command/__pycache__/build.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/command/__pycache__/build_cexe.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/command/__pycache__/build_cexe.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/command/__pycache__/build_ctools.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/command/__pycache__/build_ctools.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/command/__pycache__/build_exe.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/command/__pycache__/build_exe.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/command/__pycache__/build_ext.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/command/__pycache__/build_ext.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/command/__pycache__/build_files.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/command/__pycache__/build_files.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/command/__pycache__/build_scripts.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/command/__pycache__/build_scripts.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/command/__pycache__/install.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/command/__pycache__/install.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/command/__pycache__/install_scripts.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/command/__pycache__/install_scripts.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/command/__pycache__/littlebigman.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/command/__pycache__/littlebigman.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/command/__pycache__/pidname.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/command/__pycache__/pidname.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/command/__pycache__/sdist.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/command/__pycache__/sdist.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/serenity/__pycache__/__init__.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/serenity/__pycache__/__init__.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/serenity/__pycache__/checkpackage.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/serenity/__pycache__/checkpackage.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/serenity/__pycache__/checkpip.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/serenity/__pycache__/checkpip.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/serenity/__pycache__/checkpython.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/serenity/__pycache__/checkpython.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/serenity/__pycache__/checksystem.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/serenity/__pycache__/checksystem.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/serenity/__pycache__/globals.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/serenity/__pycache__/globals.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/serenity/__pycache__/rerun.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/serenity/__pycache__/rerun.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/serenity/__pycache__/snake.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/serenity/__pycache__/snake.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/serenity/__pycache__/util.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/serenity/__pycache__/util.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distutils.ext/obidistutils/serenity/__pycache__/virtual.cpython-311.pyc: binary file contents changed
> dpkg-source: error: add distutils.ext/obidistutils/serenity/__pycache__/virtual.cpython-311.pyc in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: unrepresentable changes to source
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1
> 
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S' failed to run.


The full build log is available from:
http://qa-logs.debian.net/2023/08/13/obitools_1.2.13+dfsg-5_unstable.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.