[Debian-med-packaging] Bug#1047978: lumpy-sv: Fails to build source after successful build
Lucas Nussbaum
lucas at debian.org
Sun Aug 13 20:20:57 BST 2023
Source: lumpy-sv
Version: 0.3.1+dfsg-7
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild
Hi,
This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S
> ----------------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package lumpy-sv
> dpkg-buildpackage: info: source version 0.3.1+dfsg-7
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Andreas Tille <tille at debian.org>
> dpkg-source --before-build .
> debian/rules clean
> dh clean --with python3
> dh_auto_clean
> make -j8 clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> Cleaning up.
> #rm -Rf /lib
> #rm -f /src/api/*.o
> #rm -f /src/api/internal/*.o
> #rm -Rf /include
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_clean
> dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building lumpy-sv using existing ./lumpy-sv_0.3.1+dfsg.orig.tar.xz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: error: cannot represent change to data/pe.pos_sorted.bam: binary file contents changed
> dpkg-source: error: add data/pe.pos_sorted.bam in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to data/sr.pos_sorted.bam: binary file contents changed
> dpkg-source: error: add data/sr.pos_sorted.bam in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/filter/lumpy_filter: binary file contents changed
> dpkg-source: error: add src/filter/lumpy_filter in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'src/filter/lumpy_filter' will not be represented in diff
> dpkg-source: error: unrepresentable changes to source
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/13/lumpy-sv_0.3.1+dfsg-7_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
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