[Debian-med-packaging] Bug#1048044: muscle3: Fails to build source after successful build

[Lucas Nussbaum]

Source: muscle3
Version: 3.8.1551-2
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild

Hi,

This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).

This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.

More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild

Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S
> ------------------------------------------------------------------------------------------------------------------------
> 
> dpkg-buildpackage: info: source package muscle3
> dpkg-buildpackage: info: source version 3.8.1551-2
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Étienne Mollier <emollier at debian.org>
>  dpkg-source --before-build .
>  debian/rules clean
> dh clean
>    dh_auto_clean
>    dh_clean
>  dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building muscle3 using existing ./muscle3_3.8.1551.orig.tar.gz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: error: cannot represent change to aligngivenpath.o: binary file contents changed
> dpkg-source: error: add aligngivenpath.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to aligngivenpathsw.o: binary file contents changed
> dpkg-source: error: add aligngivenpathsw.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to aligntwomsas.o: binary file contents changed
> dpkg-source: error: add aligntwomsas.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to aligntwoprofs.o: binary file contents changed
> dpkg-source: error: add aligntwoprofs.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to aln.o: binary file contents changed
> dpkg-source: error: add aln.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to alpha.o: binary file contents changed
> dpkg-source: error: add alpha.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to anchors.o: binary file contents changed
> dpkg-source: error: add anchors.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to bittraceback.o: binary file contents changed
> dpkg-source: error: add bittraceback.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to blosum62.o: binary file contents changed
> dpkg-source: error: add blosum62.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to blosumla.o: binary file contents changed
> dpkg-source: error: add blosumla.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to clust.o: binary file contents changed
> dpkg-source: error: add clust.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to cluster.o: binary file contents changed
> dpkg-source: error: add cluster.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to clwwt.o: binary file contents changed
> dpkg-source: error: add clwwt.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to color.o: binary file contents changed
> dpkg-source: error: add color.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to cons.o: binary file contents changed
> dpkg-source: error: add cons.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to diaglist.o: binary file contents changed
> dpkg-source: error: add diaglist.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to diffobjscore.o: binary file contents changed
> dpkg-source: error: add diffobjscore.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to diffpaths.o: binary file contents changed
> dpkg-source: error: add diffpaths.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to difftrees.o: binary file contents changed
> dpkg-source: error: add difftrees.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to difftreese.o: binary file contents changed
> dpkg-source: error: add difftreese.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distcalc.o: binary file contents changed
> dpkg-source: error: add distcalc.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distfunc.o: binary file contents changed
> dpkg-source: error: add distfunc.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to distpwkimura.o: binary file contents changed
> dpkg-source: error: add distpwkimura.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to domuscle.o: binary file contents changed
> dpkg-source: error: add domuscle.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to dosp.o: binary file contents changed
> dpkg-source: error: add dosp.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to dpreglist.o: binary file contents changed
> dpkg-source: error: add dpreglist.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to drawtree.o: binary file contents changed
> dpkg-source: error: add drawtree.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to edgelist.o: binary file contents changed
> dpkg-source: error: add edgelist.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to enumopts.o: binary file contents changed
> dpkg-source: error: add enumopts.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to enumtostr.o: binary file contents changed
> dpkg-source: error: add enumtostr.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to estring.o: binary file contents changed
> dpkg-source: error: add estring.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fasta.o: binary file contents changed
> dpkg-source: error: add fasta.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fasta2.o: binary file contents changed
> dpkg-source: error: add fasta2.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fastclust.o: binary file contents changed
> dpkg-source: error: add fastclust.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fastdist.o: binary file contents changed
> dpkg-source: error: add fastdist.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fastdistjones.o: binary file contents changed
> dpkg-source: error: add fastdistjones.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fastdistkbit.o: binary file contents changed
> dpkg-source: error: add fastdistkbit.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fastdistkmer.o: binary file contents changed
> dpkg-source: error: add fastdistkmer.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fastdistmafft.o: binary file contents changed
> dpkg-source: error: add fastdistmafft.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fastdistnuc.o: binary file contents changed
> dpkg-source: error: add fastdistnuc.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fastscorepath2.o: binary file contents changed
> dpkg-source: error: add fastscorepath2.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to finddiags.o: binary file contents changed
> dpkg-source: error: add finddiags.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to finddiagsn.o: binary file contents changed
> dpkg-source: error: add finddiagsn.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glbalign.o: binary file contents changed
> dpkg-source: error: add glbalign.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glbalign352.o: binary file contents changed
> dpkg-source: error: add glbalign352.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glbaligndiag.o: binary file contents changed
> dpkg-source: error: add glbaligndiag.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glbalignle.o: binary file contents changed
> dpkg-source: error: add glbalignle.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glbalignsimple.o: binary file contents changed
> dpkg-source: error: add glbalignsimple.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glbalignsp.o: binary file contents changed
> dpkg-source: error: add glbalignsp.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glbalignspn.o: binary file contents changed
> dpkg-source: error: add glbalignspn.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glbalignss.o: binary file contents changed
> dpkg-source: error: add glbalignss.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glbalndimer.o: binary file contents changed
> dpkg-source: error: add glbalndimer.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to globals.o: binary file contents changed
> dpkg-source: error: add globals.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to globalslinux.o: binary file contents changed
> dpkg-source: error: add globalslinux.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to globalsosx.o: binary file contents changed
> dpkg-source: error: add globalsosx.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to globalsother.o: binary file contents changed
> dpkg-source: error: add globalsother.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to globalswin32.o: binary file contents changed
> dpkg-source: error: add globalswin32.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to gonnet.o: binary file contents changed
> dpkg-source: error: add gonnet.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to henikoffweight.o: binary file contents changed
> dpkg-source: error: add henikoffweight.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to henikoffweightpb.o: binary file contents changed
> dpkg-source: error: add henikoffweightpb.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to html.o: binary file contents changed
> dpkg-source: error: add html.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to hydro.o: binary file contents changed
> dpkg-source: error: add hydro.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to intmath.o: binary file contents changed
> dpkg-source: error: add intmath.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to local.o: binary file contents changed
> dpkg-source: error: add local.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to main.o: binary file contents changed
> dpkg-source: error: add main.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to makerootmsa.o: binary file contents changed
> dpkg-source: error: add makerootmsa.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to makerootmsab.o: binary file contents changed
> dpkg-source: error: add makerootmsab.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to maketree.o: binary file contents changed
> dpkg-source: error: add maketree.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to mhack.o: binary file contents changed
> dpkg-source: error: add mhack.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to mpam200.o: binary file contents changed
> dpkg-source: error: add mpam200.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to msa.o: binary file contents changed
> dpkg-source: error: add msa.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to msa2.o: binary file contents changed
> dpkg-source: error: add msa2.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to msadistkimura.o: binary file contents changed
> dpkg-source: error: add msadistkimura.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to msf.o: binary file contents changed
> dpkg-source: error: add msf.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to muscle: binary file contents changed
> dpkg-source: error: add muscle in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'muscle' will not be represented in diff
> dpkg-source: error: cannot represent change to muscle.o: binary file contents changed
> dpkg-source: error: add muscle.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to muscleout.o: binary file contents changed
> dpkg-source: error: add muscleout.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to nucmx.o: binary file contents changed
> dpkg-source: error: add nucmx.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to nwdasimple.o: binary file contents changed
> dpkg-source: error: add nwdasimple.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to nwdasimple2.o: binary file contents changed
> dpkg-source: error: add nwdasimple2.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to nwdasmall.o: binary file contents changed
> dpkg-source: error: add nwdasmall.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to nwrec.o: binary file contents changed
> dpkg-source: error: add nwrec.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to nwsmall.o: binary file contents changed
> dpkg-source: error: add nwsmall.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to objscore.o: binary file contents changed
> dpkg-source: error: add objscore.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to objscore2.o: binary file contents changed
> dpkg-source: error: add objscore2.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to objscoreda.o: binary file contents changed
> dpkg-source: error: add objscoreda.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to onexception.o: binary file contents changed
> dpkg-source: error: add onexception.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to options.o: binary file contents changed
> dpkg-source: error: add options.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to outweights.o: binary file contents changed
> dpkg-source: error: add outweights.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to pam200mafft.o: binary file contents changed
> dpkg-source: error: add pam200mafft.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to params.o: binary file contents changed
> dpkg-source: error: add params.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to phy.o: binary file contents changed
> dpkg-source: error: add phy.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to phy2.o: binary file contents changed
> dpkg-source: error: add phy2.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to phy3.o: binary file contents changed
> dpkg-source: error: add phy3.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to phy4.o: binary file contents changed
> dpkg-source: error: add phy4.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to phyfromclust.o: binary file contents changed
> dpkg-source: error: add phyfromclust.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to phyfromfile.o: binary file contents changed
> dpkg-source: error: add phyfromfile.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to physeq.o: binary file contents changed
> dpkg-source: error: add physeq.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to phytofile.o: binary file contents changed
> dpkg-source: error: add phytofile.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to posgap.o: binary file contents changed
> dpkg-source: error: add posgap.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to ppscore.o: binary file contents changed
> dpkg-source: error: add ppscore.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to profdb.o: binary file contents changed
> dpkg-source: error: add profdb.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to profile.o: binary file contents changed
> dpkg-source: error: add profile.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to profilefrommsa.o: binary file contents changed
> dpkg-source: error: add profilefrommsa.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to progalign.o: binary file contents changed
> dpkg-source: error: add progalign.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to progress.o: binary file contents changed
> dpkg-source: error: add progress.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to progressivealign.o: binary file contents changed
> dpkg-source: error: add progressivealign.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to pwpath.o: binary file contents changed
> dpkg-source: error: add pwpath.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to readmx.o: binary file contents changed
> dpkg-source: error: add readmx.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to realigndiffs.o: binary file contents changed
> dpkg-source: error: add realigndiffs.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to realigndiffse.o: binary file contents changed
> dpkg-source: error: add realigndiffse.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to refine.o: binary file contents changed
> dpkg-source: error: add refine.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to refinehoriz.o: binary file contents changed
> dpkg-source: error: add refinehoriz.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to refinesubfams.o: binary file contents changed
> dpkg-source: error: add refinesubfams.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to refinetree.o: binary file contents changed
> dpkg-source: error: add refinetree.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to refinetreee.o: binary file contents changed
> dpkg-source: error: add refinetreee.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to refinevert.o: binary file contents changed
> dpkg-source: error: add refinevert.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to refinew.o: binary file contents changed
> dpkg-source: error: add refinew.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to savebest.o: binary file contents changed
> dpkg-source: error: add savebest.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to scoredist.o: binary file contents changed
> dpkg-source: error: add scoredist.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to scoregaps.o: binary file contents changed
> dpkg-source: error: add scoregaps.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to scorehistory.o: binary file contents changed
> dpkg-source: error: add scorehistory.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to scorepp.o: binary file contents changed
> dpkg-source: error: add scorepp.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to seq.o: binary file contents changed
> dpkg-source: error: add seq.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to seqvect.o: binary file contents changed
> dpkg-source: error: add seqvect.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to setblosumweights.o: binary file contents changed
> dpkg-source: error: add setblosumweights.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to setgscweights.o: binary file contents changed
> dpkg-source: error: add setgscweights.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to setnewhandler.o: binary file contents changed
> dpkg-source: error: add setnewhandler.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to spfast.o: binary file contents changed
> dpkg-source: error: add spfast.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to sptest.o: binary file contents changed
> dpkg-source: error: add sptest.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to stabilize.o: binary file contents changed
> dpkg-source: error: add stabilize.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to subfam.o: binary file contents changed
> dpkg-source: error: add subfam.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to subfams.o: binary file contents changed
> dpkg-source: error: add subfams.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to sw.o: binary file contents changed
> dpkg-source: error: add sw.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to termgaps.o: binary file contents changed
> dpkg-source: error: add termgaps.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to textfile.o: binary file contents changed
> dpkg-source: error: add textfile.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to threewaywt.o: binary file contents changed
> dpkg-source: error: add threewaywt.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to tomhydro.o: binary file contents changed
> dpkg-source: error: add tomhydro.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to traceback.o: binary file contents changed
> dpkg-source: error: add traceback.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to tracebackopt.o: binary file contents changed
> dpkg-source: error: add tracebackopt.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to tracebacksw.o: binary file contents changed
> dpkg-source: error: add tracebacksw.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to treefrommsa.o: binary file contents changed
> dpkg-source: error: add treefrommsa.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to typetostr.o: binary file contents changed
> dpkg-source: error: add typetostr.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to upgma2.o: binary file contents changed
> dpkg-source: error: add upgma2.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to usage.o: binary file contents changed
> dpkg-source: error: add usage.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to validateids.o: binary file contents changed
> dpkg-source: error: add validateids.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to vtml2.o: binary file contents changed
> dpkg-source: error: add vtml2.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to writescorefile.o: binary file contents changed
> dpkg-source: error: add writescorefile.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: unrepresentable changes to source
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 29
> 
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S' failed to run.


The full build log is available from:
http://qa-logs.debian.net/2023/08/13/muscle3_3.8.1551-2_unstable.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.