[Debian-med-packaging] Bug#1048281: unifrac-tools: Fails to build source after successful build

[Lucas Nussbaum]

Source: unifrac-tools
Version: 1.3.2-3
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild

Hi,

This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).

This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.

More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild

Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S
> ---------------------------------------------------------------------------------------------------------------------------------
> 
> dpkg-buildpackage: info: source package unifrac-tools
> dpkg-buildpackage: info: source version 1.3.2-3
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Andreas Tille <tille at debian.org>
>  dpkg-source --before-build .
>  debian/rules clean
> dh clean --no-parallel
>    dh_auto_clean -O--no-parallel
> 	make -j1 clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> cd test && make clean
> make[2]: Entering directory '/<<PKGBUILDDIR>>/test'
> rm -f *.o capi_test
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/test'
> cd src && make clean
> make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
> rm -f *.o ssu faithpd test_su test_ska test_api libssu.so
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
> cd combined && make clean
> make[2]: Entering directory '/<<PKGBUILDDIR>>/combined'
> rm -f libssu.o libssu.so
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/combined'
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
>    dh_autoreconf_clean -O--no-parallel
>    dh_clean -O--no-parallel
>  dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building unifrac-tools using existing ./unifrac-tools_1.3.2.orig.tar.gz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: error: cannot represent change to src/libssu_nv.so:
> dpkg-source: error:   new version is symlink to libssu_nv.so.0
> dpkg-source: error:   old version is nonexistent
> dpkg-source: error: cannot represent change to src/libssu_nv_avx2.so:
> dpkg-source: error:   new version is symlink to libssu_nv_avx2.so.0
> dpkg-source: error:   old version is nonexistent
> dpkg-source: error: cannot represent change to src/libssu_cpu_basic.so:
> dpkg-source: error:   new version is symlink to libssu_cpu_basic.so.0
> dpkg-source: error:   old version is nonexistent
> dpkg-source: error: cannot represent change to ci/test.dm.start0.stop3: binary file contents changed
> dpkg-source: error: add ci/test.dm.start0.stop3 in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to ci/test.dm.start3.stop5: binary file contents changed
> dpkg-source: error: add ci/test.dm.start3.stop5 in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/faithpd_cpu_basic: binary file contents changed
> dpkg-source: error: add src/faithpd_cpu_basic in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'src/faithpd_cpu_basic' will not be represented in diff
> dpkg-source: error: cannot represent change to src/faithpd_nv: binary file contents changed
> dpkg-source: error: add src/faithpd_nv in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'src/faithpd_nv' will not be represented in diff
> dpkg-source: error: cannot represent change to src/faithpd_nv_avx2: binary file contents changed
> dpkg-source: error: add src/faithpd_nv_avx2 in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'src/faithpd_nv_avx2' will not be represented in diff
> dpkg-source: error: cannot represent change to src/libssu.so.0: binary file contents changed
> dpkg-source: error: add src/libssu.so.0 in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'src/libssu.so.0' will not be represented in diff
> dpkg-source: error: cannot represent change to src/libssu_cpu_basic.so.0: binary file contents changed
> dpkg-source: error: add src/libssu_cpu_basic.so.0 in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'src/libssu_cpu_basic.so.0' will not be represented in diff
> dpkg-source: error: cannot represent change to src/libssu_nv.so.0: binary file contents changed
> dpkg-source: error: add src/libssu_nv.so.0 in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'src/libssu_nv.so.0' will not be represented in diff
> dpkg-source: error: cannot represent change to src/libssu_nv_avx2.so.0: binary file contents changed
> dpkg-source: error: add src/libssu_nv_avx2.so.0 in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'src/libssu_nv_avx2.so.0' will not be represented in diff
> dpkg-source: error: cannot represent change to src/ssu_cpu_basic: binary file contents changed
> dpkg-source: error: add src/ssu_cpu_basic in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'src/ssu_cpu_basic' will not be represented in diff
> dpkg-source: error: cannot represent change to src/ssu_nv: binary file contents changed
> dpkg-source: error: add src/ssu_nv in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'src/ssu_nv' will not be represented in diff
> dpkg-source: error: cannot represent change to src/ssu_nv_avx2: binary file contents changed
> dpkg-source: error: add src/ssu_nv_avx2 in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: executable mode 0755 of 'src/ssu_nv_avx2' will not be represented in diff
> dpkg-source: error: unrepresentable changes to source
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1
> 
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S' failed to run.


The full build log is available from:
http://qa-logs.debian.net/2023/08/13/unifrac-tools_1.3.2-3_unstable.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.