[Debian-med-packaging] Bug#1048716: seqan-raptor: Fails to build source after successful build

[Lucas Nussbaum]

Source: seqan-raptor
Version: 3.0.0+ds-2
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild

Hi,

This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).

This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.

More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild

Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S
> ----------------------------------------------------------------------------------------------------------------------------------
> 
> dpkg-buildpackage: info: source package seqan-raptor
> dpkg-buildpackage: info: source version 3.0.0+ds-2
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Michael R. Crusoe <crusoe at debian.org>
>  dpkg-source --before-build .
>  debian/rules clean
> dh clean
>    dh_auto_clean
>    dh_clean
>  dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building seqan-raptor using existing ./seqan-raptor_3.0.0+ds.orig.tar.xz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: error: cannot represent change to doc_build/cppreference-doxygen-web.tag.xml:
> dpkg-source: error:   new version is symlink to /usr/share/devhelp/books/cppreference-doxygen-web.tag.xml
> dpkg-source: error:   old version is nonexistent
> dpkg-source: warning: newly created empty file 'doc_build/CMakeFiles/download-cppreference-doxygen-web-tag-complete' will not be represented in diff
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/CMakeFiles/download-cppreference-doxygen-web-tag.dir/Labels.json has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file 'doc_build/download-cppreference-doxygen-web-tag-prefix/src/download-cppreference-doxygen-web-tag-stamp/download-cppreference-doxygen-web-tag-build' will not be represented in diff
> dpkg-source: warning: newly created empty file 'doc_build/download-cppreference-doxygen-web-tag-prefix/src/download-cppreference-doxygen-web-tag-stamp/download-cppreference-doxygen-web-tag-configure' will not be represented in diff
> dpkg-source: warning: newly created empty file 'doc_build/download-cppreference-doxygen-web-tag-prefix/src/download-cppreference-doxygen-web-tag-stamp/download-cppreference-doxygen-web-tag-done' will not be represented in diff
> dpkg-source: warning: newly created empty file 'doc_build/download-cppreference-doxygen-web-tag-prefix/src/download-cppreference-doxygen-web-tag-stamp/download-cppreference-doxygen-web-tag-download' will not be represented in diff
> dpkg-source: warning: newly created empty file 'doc_build/download-cppreference-doxygen-web-tag-prefix/src/download-cppreference-doxygen-web-tag-stamp/download-cppreference-doxygen-web-tag-install' will not be represented in diff
> dpkg-source: warning: newly created empty file 'doc_build/download-cppreference-doxygen-web-tag-prefix/src/download-cppreference-doxygen-web-tag-stamp/download-cppreference-doxygen-web-tag-mkdir' will not be represented in diff
> dpkg-source: warning: newly created empty file 'doc_build/download-cppreference-doxygen-web-tag-prefix/src/download-cppreference-doxygen-web-tag-stamp/download-cppreference-doxygen-web-tag-patch' will not be represented in diff
> dpkg-source: warning: newly created empty file 'doc_build/download-cppreference-doxygen-web-tag-prefix/src/download-cppreference-doxygen-web-tag-stamp/download-cppreference-doxygen-web-tag-update' will not be represented in diff
> dpkg-source: warning: newly created empty file 'doc_build/doxygen.cerr' will not be represented in diff
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/annotated_dup.js has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to doc_build/html/bc_s.png: binary file contents changed
> dpkg-source: error: add doc_build/html/bc_s.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/bdwn.png: binary file contents changed
> dpkg-source: error: add doc_build/html/bdwn.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/build__arguments_8hpp.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/build__data_8hpp.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/chopper__pack__record_8hpp.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/classraptor_1_1hierarchical__interleaved__bloom__filter.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/classraptor_1_1hierarchical__interleaved__bloom__filter_1_1counting__agent__type.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/classraptor_1_1hierarchical__interleaved__bloom__filter_1_1membership__agent__type.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/classraptor_1_1hierarchical__interleaved__bloom__filter_1_1user__bins.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/classraptor_1_1raptor__index.js has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to doc_build/html/classraptor_1_1sequence__file__validator.png: binary file contents changed
> dpkg-source: error: add doc_build/html/classraptor_1_1sequence__file__validator.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/closed.png: binary file contents changed
> dpkg-source: error: add doc_build/html/closed.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/cutoff_8hpp.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dir_085ce8a2835b8edba6202d4a5512ea31.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dir_2dad5172a7ef9743d7a9131094d0c3b5.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dir_3666864c7891cd2fdf4c53345ed3e95f.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dir_3cd4e077745563bc947bdaf52879deb2.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dir_49b4607306081ef213c970820981a077.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dir_5abe0978cde2304bdf9389a6fc3e3a3d.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dir_5e53e25df8c865d23c4f0f620d3a69fb.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dir_640b9ed1b360482aafc1f7a7b68fe680.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dir_68267d1309a1af8e8297ef4c3efbcdba.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dir_7bf9c4a429e0096bdebd9cdd31202fb0.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dir_85b5a9e8cb8130e2e92766ccedcb5eef.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dir_ba35e0ae43ff1981ea027b91024bdcab.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dir_c2fcf3be784993bb5c8f7c337d0d625f.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dir_caa1bcc7b41c287f98c15110e098328f.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dir_d9161729fcdcd4bf72ba394b2a16b9d9.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dir_e22c8097141a5934560fb3cdb82b8b51.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dir_f2b3bec0b800804983017014eef9ca7d.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dir_f613901ea603c6fa55334d6d4ddf7f3e.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/dna4__traits_8hpp.js has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to doc_build/html/doc.png: binary file contents changed
> dpkg-source: error: add doc_build/html/doc.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/emplace__iterator_8hpp.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/file__reader_8hpp.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/files_dup.js has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to doc_build/html/folderclosed.png: binary file contents changed
> dpkg-source: error: add doc_build/html/folderclosed.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/folderopen.png: binary file contents changed
> dpkg-source: error: add doc_build/html/folderopen.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_0.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_0.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_1.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_1.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_10.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_10.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_11.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_11.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_12.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_12.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_13.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_13.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_14.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_14.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_15.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_15.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_16.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_16.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_17.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_17.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_18.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_18.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_19.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_19.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_2.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_2.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_20.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_20.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_21.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_21.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_22.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_22.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_23.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_23.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_3.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_3.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_4.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_4.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_5.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_5.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_6.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_6.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_7.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_7.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_8.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_8.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/form_9.png: binary file contents changed
> dpkg-source: error: add doc_build/html/form_9.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/forward__strand__minimiser_8hpp.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/hibf.svg has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/hierarchical__interleaved__bloom__filter_8hpp.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/hierarchy.js has no final newline (either original or modified version)
> dpkg-source: warning: executable mode 0755 of 'doc_build/html/ibf.svg' will not be represented in diff
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/index_8hpp.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/index__factory_8hpp.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/index__upgrader_8hpp.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/jquery.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/logspace_8hpp.js has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to doc_build/html/nav_f.png: binary file contents changed
> dpkg-source: error: add doc_build/html/nav_f.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/nav_g.png: binary file contents changed
> dpkg-source: error: add doc_build/html/nav_g.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/nav_h.png: binary file contents changed
> dpkg-source: error: add doc_build/html/nav_h.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/navtreedata.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/node__data_8hpp.js has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to doc_build/html/open.png: binary file contents changed
> dpkg-source: error: add doc_build/html/open.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/partition__config_8hpp.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/prepare__arguments_8hpp.js has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to doc_build/html/search/search_l.png: binary file contents changed
> dpkg-source: error: add doc_build/html/search/search_l.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/search/search_m.png: binary file contents changed
> dpkg-source: error: add doc_build/html/search/search_m.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/search/search_r.png: binary file contents changed
> dpkg-source: error: add doc_build/html/search/search_r.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/search__arguments_8hpp.js has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to doc_build/html/splitbar.png: binary file contents changed
> dpkg-source: error: add doc_build/html/splitbar.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/strong__types_8hpp.js has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to doc_build/html/structraptor_1_1dna4__traits.png: binary file contents changed
> dpkg-source: error: add doc_build/html/structraptor_1_1dna4__traits.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/structraptor_1_1hibf_1_1build__data.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/structraptor_1_1threshold_1_1forward__strand__minimiser.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/sync__out_8hpp.js has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to doc_build/html/sync_off.png: binary file contents changed
> dpkg-source: error: add doc_build/html/sync_off.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/sync_on.png: binary file contents changed
> dpkg-source: error: add doc_build/html/sync_on.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/tab_a.png: binary file contents changed
> dpkg-source: error: add doc_build/html/tab_a.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/tab_b.png: binary file contents changed
> dpkg-source: error: add doc_build/html/tab_b.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/tab_h.png: binary file contents changed
> dpkg-source: error: add doc_build/html/tab_h.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to doc_build/html/tab_s.png: binary file contents changed
> dpkg-source: error: add doc_build/html/tab_s.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/threshold_8hpp.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/threshold__parameters_8hpp.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/timer_8hpp.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/upgrade__arguments_8hpp.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/validators_8hpp.js has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/html/version_8hpp.js has no final newline (either original or modified version)
> dpkg-source: warning: newly created empty file 'doc_build/install_manifest.txt' will not be represented in diff
> dpkg-source: error: cannot represent change to doc_build/latex/classraptor_1_1sequence__file__validator.pdf: binary file contents changed
> dpkg-source: error: add doc_build/latex/classraptor_1_1sequence__file__validator.pdf in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/latex/md__build_seqan_raptor_sSUQKB_seqan_raptor_3_0_0_ds_CHANGELOG.tex has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/latex/md__build_seqan_raptor_sSUQKB_seqan_raptor_3_0_0_ds_LICENSE.tex has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/latex/namespaceraptor_1_1hibf.tex has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to doc_build/latex/refman.pdf: binary file contents changed
> dpkg-source: error: add doc_build/latex/refman.pdf in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/latex/setup.tex has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to doc_build/latex/structraptor_1_1dna4__traits.pdf: binary file contents changed
> dpkg-source: error: add doc_build/latex/structraptor_1_1dna4__traits.pdf in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/latex/tutorial_first_steps.tex has no final newline (either original or modified version)
> dpkg-source: warning: file seqan-raptor-3.0.0+ds/doc_build/latex/tutorial_layout.tex has no final newline (either original or modified version)
> dpkg-source: error: unrepresentable changes to source
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1
> 
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S' failed to run.


The full build log is available from:
http://qa-logs.debian.net/2023/08/13/seqan-raptor_3.0.0+ds-2_unstable.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.