[Debian-med-packaging] Bug#1049268: resfinder-db: Fails to build source after successful build

[Lucas Nussbaum]

Source: resfinder-db
Version: 0.0+git20220524.fa32d9a-1
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild

Hi,

This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).

This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.

More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild

Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S
> -------------------------------------------------------------------------------------------------------------------------------------------------
> 
> dpkg-buildpackage: info: source package resfinder-db
> dpkg-buildpackage: info: source version 0.0+git20220524.fa32d9a-1
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Nilesh Patra <nilesh at debian.org>
>  dpkg-source --before-build .
>  debian/rules clean
> dh clean
>    dh_clean
>  dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building resfinder-db using existing ./resfinder-db_0.0+git20220524.fa32d9a.orig.tar.xz
> dpkg-source: error: cannot represent change to all.comp.b: binary file contents changed
> dpkg-source: error: add all.comp.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to all.length.b: binary file contents changed
> dpkg-source: error: add all.length.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to all.seq.b: binary file contents changed
> dpkg-source: error: add all.seq.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to aminoglycoside.comp.b: binary file contents changed
> dpkg-source: error: add aminoglycoside.comp.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to aminoglycoside.length.b: binary file contents changed
> dpkg-source: error: add aminoglycoside.length.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to aminoglycoside.seq.b: binary file contents changed
> dpkg-source: error: add aminoglycoside.seq.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to beta-lactam.comp.b: binary file contents changed
> dpkg-source: error: add beta-lactam.comp.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to beta-lactam.length.b: binary file contents changed
> dpkg-source: error: add beta-lactam.length.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to beta-lactam.seq.b: binary file contents changed
> dpkg-source: error: add beta-lactam.seq.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to colistin.comp.b: binary file contents changed
> dpkg-source: error: add colistin.comp.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to colistin.length.b: binary file contents changed
> dpkg-source: error: add colistin.length.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to colistin.seq.b: binary file contents changed
> dpkg-source: error: add colistin.seq.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to disinfectant.comp.b: binary file contents changed
> dpkg-source: error: add disinfectant.comp.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to disinfectant.length.b: binary file contents changed
> dpkg-source: error: add disinfectant.length.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to disinfectant.seq.b: binary file contents changed
> dpkg-source: error: add disinfectant.seq.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fosfomycin.comp.b: binary file contents changed
> dpkg-source: error: add fosfomycin.comp.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fosfomycin.length.b: binary file contents changed
> dpkg-source: error: add fosfomycin.length.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fosfomycin.seq.b: binary file contents changed
> dpkg-source: error: add fosfomycin.seq.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fusidicacid.comp.b: binary file contents changed
> dpkg-source: error: add fusidicacid.comp.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fusidicacid.length.b: binary file contents changed
> dpkg-source: error: add fusidicacid.length.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to fusidicacid.seq.b: binary file contents changed
> dpkg-source: error: add fusidicacid.seq.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glycopeptide.comp.b: binary file contents changed
> dpkg-source: error: add glycopeptide.comp.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glycopeptide.length.b: binary file contents changed
> dpkg-source: error: add glycopeptide.length.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to glycopeptide.seq.b: binary file contents changed
> dpkg-source: error: add glycopeptide.seq.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to macrolide.comp.b: binary file contents changed
> dpkg-source: error: add macrolide.comp.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to macrolide.length.b: binary file contents changed
> dpkg-source: error: add macrolide.length.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to macrolide.seq.b: binary file contents changed
> dpkg-source: error: add macrolide.seq.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to nitroimidazole.comp.b: binary file contents changed
> dpkg-source: error: add nitroimidazole.comp.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to nitroimidazole.length.b: binary file contents changed
> dpkg-source: error: add nitroimidazole.length.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to nitroimidazole.seq.b: binary file contents changed
> dpkg-source: error: add nitroimidazole.seq.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to oxazolidinone.comp.b: binary file contents changed
> dpkg-source: error: add oxazolidinone.comp.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to oxazolidinone.length.b: binary file contents changed
> dpkg-source: error: add oxazolidinone.length.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to oxazolidinone.seq.b: binary file contents changed
> dpkg-source: error: add oxazolidinone.seq.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to phenicol.comp.b: binary file contents changed
> dpkg-source: error: add phenicol.comp.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to phenicol.length.b: binary file contents changed
> dpkg-source: error: add phenicol.length.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to phenicol.seq.b: binary file contents changed
> dpkg-source: error: add phenicol.seq.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to pseudomonicacid.comp.b: binary file contents changed
> dpkg-source: error: add pseudomonicacid.comp.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to pseudomonicacid.length.b: binary file contents changed
> dpkg-source: error: add pseudomonicacid.length.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to pseudomonicacid.seq.b: binary file contents changed
> dpkg-source: error: add pseudomonicacid.seq.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to quinolone.comp.b: binary file contents changed
> dpkg-source: error: add quinolone.comp.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to quinolone.length.b: binary file contents changed
> dpkg-source: error: add quinolone.length.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to quinolone.seq.b: binary file contents changed
> dpkg-source: error: add quinolone.seq.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to rifampicin.comp.b: binary file contents changed
> dpkg-source: error: add rifampicin.comp.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to rifampicin.length.b: binary file contents changed
> dpkg-source: error: add rifampicin.length.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to rifampicin.seq.b: binary file contents changed
> dpkg-source: error: add rifampicin.seq.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to sulphonamide.comp.b: binary file contents changed
> dpkg-source: error: add sulphonamide.comp.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to sulphonamide.length.b: binary file contents changed
> dpkg-source: error: add sulphonamide.length.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to sulphonamide.seq.b: binary file contents changed
> dpkg-source: error: add sulphonamide.seq.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to tetracycline.comp.b: binary file contents changed
> dpkg-source: error: add tetracycline.comp.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to tetracycline.length.b: binary file contents changed
> dpkg-source: error: add tetracycline.length.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to tetracycline.seq.b: binary file contents changed
> dpkg-source: error: add tetracycline.seq.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to trimethoprim.comp.b: binary file contents changed
> dpkg-source: error: add trimethoprim.comp.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to trimethoprim.length.b: binary file contents changed
> dpkg-source: error: add trimethoprim.length.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to trimethoprim.seq.b: binary file contents changed
> dpkg-source: error: add trimethoprim.seq.b in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: unrepresentable changes to source
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 29
> 
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S' failed to run.


The full build log is available from:
http://qa-logs.debian.net/2023/08/13/resfinder-db_0.0+git20220524.fa32d9a-1_unstable.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.