[Debian-med-packaging] Bug#1049497: python-dendropy: Fails to build binary packages again after successful build

Lucas Nussbaum lucas at debian.org
Wed Aug 16 08:42:50 BST 2023 

Source: python-dendropy
Version: 4.5.2-1
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-binary-20230816 ftbfs-binary-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild

Hi,

This package fails to do build a binary-only build (not source) after a
successful build (dpkg-buildpackage ; dpkg-buildpackage -b).

This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.

More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/DoubleBuild

Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -b
> -------------------------------------------------------------------------------------------------------------------------------------
> 
> dpkg-buildpackage: info: source package python-dendropy
> dpkg-buildpackage: info: source version 4.5.2-1
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Nilesh Patra <nilesh at debian.org>
>  dpkg-source --before-build .
> dpkg-buildpackage: info: host architecture amd64
>  debian/rules clean
> dh clean --with python3 --buildsystem=pybuild
>    dh_auto_clean -O--buildsystem=pybuild
> I: pybuild base:291: python3.11 setup.py clean 
> -setup.py: DendroPy version 4.5.2
> -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py')
> -setup.py: searching for packages
> -setup.py: packages identified:
>            - dendropy                
>            - dendropy.utility        
>            - dendropy.calculate      
>            - dendropy.simulate       
>            - dendropy.interop        
>            - dendropy.legacy         
>            - dendropy.mathlib        
>            - dendropy.dataio         
>            - dendropy.datamodel      
>            - dendropy.model          
>            - dendropy.utility.libexec
> -setup.py: scripts identified:
>            - applications/sumtrees/sumtrees.py           
>            - applications/sumlabels/sumlabels.py         
>            - applications/dendropy-format/dendropy-format
> -setup.py: setuptools command extensions are available
> running clean
> removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build' (and everything under it)
> 'build/bdist.linux-x86_64' does not exist -- can't clean it
> 'build/scripts-3.11' does not exist -- can't clean it
>    dh_autoreconf_clean -O--buildsystem=pybuild
>    dh_clean -O--buildsystem=pybuild
>  debian/rules binary
> dh binary --with python3 --buildsystem=pybuild
>    dh_update_autotools_config -O--buildsystem=pybuild
>    dh_autoreconf -O--buildsystem=pybuild
>    dh_auto_configure -O--buildsystem=pybuild
> I: pybuild base:291: python3.11 setup.py config 
> -setup.py: DendroPy version 4.5.2
> -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py')
> -setup.py: searching for packages
> -setup.py: packages identified:
>            - dendropy                
>            - dendropy.utility        
>            - dendropy.calculate      
>            - dendropy.simulate       
>            - dendropy.interop        
>            - dendropy.legacy         
>            - dendropy.mathlib        
>            - dendropy.dataio         
>            - dendropy.datamodel      
>            - dendropy.model          
>            - dendropy.utility.libexec
> -setup.py: scripts identified:
>            - applications/sumtrees/sumtrees.py           
>            - applications/sumlabels/sumlabels.py         
>            - applications/dendropy-format/dendropy-format
> -setup.py: setuptools command extensions are available
> running config
>    dh_auto_build -O--buildsystem=pybuild
> I: pybuild base:291: /usr/bin/python3 setup.py build 
> -setup.py: DendroPy version 4.5.2
> -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py')
> -setup.py: searching for packages
> -setup.py: packages identified:
>            - dendropy                
>            - dendropy.utility        
>            - dendropy.calculate      
>            - dendropy.simulate       
>            - dendropy.interop        
>            - dendropy.legacy         
>            - dendropy.mathlib        
>            - dendropy.dataio         
>            - dendropy.datamodel      
>            - dendropy.model          
>            - dendropy.utility.libexec
> -setup.py: scripts identified:
>            - applications/sumtrees/sumtrees.py           
>            - applications/sumlabels/sumlabels.py         
>            - applications/dendropy-format/dendropy-format
> -setup.py: setuptools command extensions are available
> running build
> running build_py
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy
> copying src/dendropy/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy
> copying src/dendropy/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/deprecate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/debug.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/constants.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/bibtex.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/bitprocessing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/vcsinfo.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/processio.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/cli.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/container.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/filesys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/error.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/messaging.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/urlio.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/timeprocessing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/metavar.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/terminal.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> copying src/dendropy/utility/textprocessing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/profiledistance.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/combinatorics.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/statistics.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/treesum.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/treemeasure.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/probability.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/treecompare.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/popgenstat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/phylogeneticdistance.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/mathfn.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> copying src/dendropy/calculate/treescore.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate
> copying src/dendropy/simulate/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate
> copying src/dendropy/simulate/treesim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate
> copying src/dendropy/simulate/popgensim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate
> copying src/dendropy/simulate/charsim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/biopython.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/muscle.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/ete.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/entrez.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/gbif.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/itol.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/rstats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/rspr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/paup.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/genbank.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/raxml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/seqgen.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> copying src/dendropy/interop/ape.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/coalescent.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/ncbi.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/treesum.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/treemanip.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/seqsim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/treesim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/continuous.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/popgenstat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/seqmodel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/popgensim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/treecalc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/treesplit.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> copying src/dendropy/legacy/reconcile.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib
> copying src/dendropy/mathlib/statistics.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib
> copying src/dendropy/mathlib/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib
> copying src/dendropy/mathlib/probability.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib
> copying src/dendropy/mathlib/mathfn.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/newickyielder.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/fastareader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/multiphylipreader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/newickwriter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/nexusprocessing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/newick.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/nexmlreader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/nexusyielder.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/tokenizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/nexmlyielder.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/nexmlwriter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/ioservice.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/newickreader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/xmlprocessing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/nexuswriter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/phylipreader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/nexusreader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/fastawriter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> copying src/dendropy/dataio/phylipwriter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel
> copying src/dendropy/datamodel/taxonmodel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel
> copying src/dendropy/datamodel/basemodel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel
> copying src/dendropy/datamodel/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel
> copying src/dendropy/datamodel/charstatemodel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel
> copying src/dendropy/datamodel/treecollectionmodel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel
> copying src/dendropy/datamodel/datasetmodel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel
> copying src/dendropy/datamodel/charmatrixmodel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel
> copying src/dendropy/datamodel/treemodel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/coalescent.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/protractedspeciation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/parsimony.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/treeshape.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/discrete.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/birthdeath.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/continuous.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/reconcile.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> copying src/dendropy/model/multispeciescoalescent.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/model
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/libexec
> copying src/dendropy/utility/libexec/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/libexec
> running egg_info
> writing src/DendroPy.egg-info/PKG-INFO
> writing dependency_links to src/DendroPy.egg-info/dependency_links.txt
> writing requirements to src/DendroPy.egg-info/requires.txt
> writing top-level names to src/DendroPy.egg-info/top_level.txt
> reading manifest file 'src/DendroPy.egg-info/SOURCES.txt'
> reading manifest template 'MANIFEST.in'
> warning: no files found matching 'doc/Makefile'
> warning: no files found matching '*' under directory 'doc/source'
> warning: no previously-included files matching '.DS_Store' found anywhere in distribution
> warning: no previously-included files matching '*.pyc' found anywhere in distribution
> warning: no previously-included files matching '.gitignore' found anywhere in distribution
> warning: no previously-included files matching '.gitattributes' found anywhere in distribution
> warning: no previously-included files matching '.idea' found anywhere in distribution
> warning: no previously-included files matching '__pycache__' found anywhere in distribution
> adding license file 'LICENSE.rst'
> writing manifest file 'src/DendroPy.egg-info/SOURCES.txt'
> running build_scripts
> creating build
> creating build/scripts-3.11
> copying and adjusting applications/sumtrees/sumtrees.py -> build/scripts-3.11
> copying and adjusting applications/sumlabels/sumlabels.py -> build/scripts-3.11
> error: file '/<<PKGBUILDDIR>>/applications/dendropy-format/dendropy-format' does not exist
> E: pybuild pybuild:395: build: plugin distutils failed with: exit code=1: /usr/bin/python3 setup.py build 
> dh_auto_build: error: pybuild --build -i python{version} -p 3.11 returned exit code 13
> make: *** [debian/rules:10: binary] Error 25
> dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
> 
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -b' failed to run.


The full build log is available from:
http://qa-logs.debian.net/2023/08/16/python-dendropy_4.5.2-1_unstable.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.

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