[Debian-med-packaging] Bug#1049682: abpoa: Fails to build binary packages again after successful build
Lucas Nussbaum
lucas at debian.org
Wed Aug 16 08:42:48 BST 2023
Source: abpoa
Version: 1.4.1-3
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-binary-20230816 ftbfs-binary-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild
Hi,
This package fails to do build a binary-only build (not source) after a
successful build (dpkg-buildpackage ; dpkg-buildpackage -b).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/DoubleBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -b
> -----------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package abpoa
> dpkg-buildpackage: info: source version 1.4.1-3
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Étienne Mollier <emollier at debian.org>
> dpkg-source --before-build .
> dpkg-buildpackage: info: host architecture amd64
> debian/rules clean
> dh clean --with=python3 --buildsystem=pybuild
> dh_auto_clean -O--buildsystem=pybuild
> I: pybuild base:291: python3.11 setup.py clean
> /<<PKGBUILDDIR>>/setup.py:6: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
> from distutils.core import setup
> /usr/lib/python3.11/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long_description_content_type'
> warnings.warn(msg)
> /usr/lib/python3.11/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires'
> warnings.warn(msg)
> running clean
> removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyabpoa/build' (and everything under it)
> 'build/bdist.linux-x86_64' does not exist -- can't clean it
> 'build/scripts-3.11' does not exist -- can't clean it
> dh_autoreconf_clean -O--buildsystem=pybuild
> dh_clean -O--buildsystem=pybuild
> debian/rules binary
> dh binary --with=python3 --buildsystem=pybuild
> dh_update_autotools_config -O--buildsystem=pybuild
> dh_autoreconf -O--buildsystem=pybuild
> dh_auto_configure -O--buildsystem=pybuild
> I: pybuild base:291: python3.11 setup.py config
> /<<PKGBUILDDIR>>/setup.py:6: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
> from distutils.core import setup
> /usr/lib/python3.11/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long_description_content_type'
> warnings.warn(msg)
> /usr/lib/python3.11/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires'
> warnings.warn(msg)
> running config
> dh_auto_build -O--buildsystem=pybuild
> I: pybuild base:291: /usr/bin/python3 setup.py build
> /<<PKGBUILDDIR>>/setup.py:6: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
> from distutils.core import setup
> /usr/lib/python3.11/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long_description_content_type'
> warnings.warn(msg)
> /usr/lib/python3.11/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires'
> warnings.warn(msg)
> running build
> running build_ext
> skipping 'python/pyabpoa.c' Cython extension (up-to-date)
> building 'pyabpoa' extension
> creating build
> creating build/temp.linux-x86_64-3.11
> creating build/temp.linux-x86_64-3.11/python
> creating build/temp.linux-x86_64-3.11/src
> x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c python/pyabpoa.c -o build/temp.linux-x86_64-3.11/python/pyabpoa.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
> In file included from python/pyabpoa.c:754:
> include/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
> 614 | static void *SIMDMalloc(size_t size, size_t align) {
> | ^~~~~~~~~~
> x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/abpoa_align.c -o build/temp.linux-x86_64-3.11/src/abpoa_align.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
> In file included from src/abpoa_align.c:6:
> src/abpoa_align.h: In function ‘abpoa_push_cigar’:
> src/abpoa_align.h:56:103: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
> 56 | if (*n_cigar == 0 || (op != ABPOA_CINS && op != ABPOA_CSOFT_CLIP && op != ABPOA_CHARD_CLIP) || op != (cigar[(*n_cigar)-1] & 0xf)) {
> | ^~
> src/abpoa_align.c: In function ‘abpoa_msa’:
> src/abpoa_align.c:435:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 435 | for (i = 0; i < n_seq; ++i) free(weights[i]); free(weights);
> | ^~~
> src/abpoa_align.c:435:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 435 | for (i = 0; i < n_seq; ++i) free(weights[i]); free(weights);
> | ^~~~
> In file included from src/abpoa_seq.h:5,
> from src/abpoa_align.c:7:
> src/abpoa_seq.h: At top level:
> src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function]
> 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\
> | ^~~~~~~~~
> src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’
> 235 | __KSEQ_COPY(SCOPE)
> | ^~~~~~~~~~~
> src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
> 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
> | ^~~~~~~~~~
> src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
> 7 | KSEQ_INIT(gzFile, gzread)
> | ^~~~~~~~~
> src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function]
> 176 | SCOPE int kseq_read(kseq_t *seq) \
> | ^~~~~~~~~
> src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’
> 234 | __KSEQ_READ(SCOPE) \
> | ^~~~~~~~~~~
> src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
> 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
> | ^~~~~~~~~~
> src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
> 7 | KSEQ_INIT(gzFile, gzread)
> | ^~~~~~~~~
> In file included from src/abpoa.h:5,
> from src/abpoa_align.c:4:
> src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
> 614 | static void *SIMDMalloc(size_t size, size_t align) {
> | ^~~~~~~~~~
> x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/abpoa_graph.c -o build/temp.linux-x86_64-3.11/src/abpoa_graph.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
> In file included from src/abpoa_graph.c:4:
> src/abpoa_align.h: In function ‘abpoa_push_cigar’:
> src/abpoa_align.h:56:103: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
> 56 | if (*n_cigar == 0 || (op != ABPOA_CINS && op != ABPOA_CSOFT_CLIP && op != ABPOA_CHARD_CLIP) || op != (cigar[(*n_cigar)-1] & 0xf)) {
> | ^~
> src/abpoa_graph.c: In function ‘abpoa_free_cons’:
> src/abpoa_graph.c:145:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 145 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_node_ids[i]); free(abc->cons_node_ids);
> | ^~~
> src/abpoa_graph.c:145:76: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 145 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_node_ids[i]); free(abc->cons_node_ids);
> | ^~~~
> src/abpoa_graph.c:148:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 148 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_base[i]); free(abc->cons_base);
> | ^~~
> src/abpoa_graph.c:148:72: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 148 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_base[i]); free(abc->cons_base);
> | ^~~~
> src/abpoa_graph.c:151:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 151 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_cov[i]); free(abc->cons_cov);
> | ^~~
> src/abpoa_graph.c:151:71: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 151 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_cov[i]); free(abc->cons_cov);
> | ^~~~
> src/abpoa_graph.c:154:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 154 | for (i = 0; i < abc->n_cons; ++i) free(abc->clu_read_ids[i]); free(abc->clu_read_ids);
> | ^~~
> src/abpoa_graph.c:154:75: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 154 | for (i = 0; i < abc->n_cons; ++i) free(abc->clu_read_ids[i]); free(abc->clu_read_ids);
> | ^~~~
> src/abpoa_graph.c:157:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 157 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_phred_score[i]); free(abc->cons_phred_score);
> | ^~~
> src/abpoa_graph.c:157:79: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 157 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_phred_score[i]); free(abc->cons_phred_score);
> | ^~~~
> src/abpoa_graph.c: In function ‘abpoa_reset’:
> src/abpoa_graph.c:721:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 721 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_node_ids[i]); free(abc->cons_node_ids);
> | ^~~
> src/abpoa_graph.c:721:76: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 721 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_node_ids[i]); free(abc->cons_node_ids);
> | ^~~~
> src/abpoa_graph.c:724:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 724 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_base[i]); free(abc->cons_base);
> | ^~~
> src/abpoa_graph.c:724:72: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 724 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_base[i]); free(abc->cons_base);
> | ^~~~
> src/abpoa_graph.c:727:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 727 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_cov[i]); free(abc->cons_cov);
> | ^~~
> src/abpoa_graph.c:727:71: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 727 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_cov[i]); free(abc->cons_cov);
> | ^~~~
> src/abpoa_graph.c:730:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 730 | for (i = 0; i < abc->n_cons; ++i) free(abc->clu_read_ids[i]); free(abc->clu_read_ids);
> | ^~~
> src/abpoa_graph.c:730:75: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 730 | for (i = 0; i < abc->n_cons; ++i) free(abc->clu_read_ids[i]); free(abc->clu_read_ids);
> | ^~~~
> src/abpoa_graph.c:733:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 733 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_phred_score[i]); free(abc->cons_phred_score);
> | ^~~
> src/abpoa_graph.c:733:79: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 733 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_phred_score[i]); free(abc->cons_phred_score);
> | ^~~~
> In file included from src/abpoa_seq.h:5,
> from src/abpoa_graph.c:5:
> src/abpoa_seq.h: At top level:
> src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function]
> 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\
> | ^~~~~~~~~
> src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’
> 235 | __KSEQ_COPY(SCOPE)
> | ^~~~~~~~~~~
> src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
> 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
> | ^~~~~~~~~~
> src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
> 7 | KSEQ_INIT(gzFile, gzread)
> | ^~~~~~~~~
> src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function]
> 176 | SCOPE int kseq_read(kseq_t *seq) \
> | ^~~~~~~~~
> src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’
> 234 | __KSEQ_READ(SCOPE) \
> | ^~~~~~~~~~~
> src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
> 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
> | ^~~~~~~~~~
> src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
> 7 | KSEQ_INIT(gzFile, gzread)
> | ^~~~~~~~~
> src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function]
> 162 | SCOPE void kseq_destroy(kseq_t *ks) \
> | ^~~~~~~~~~~~
> src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’
> 233 | __KSEQ_BASIC(SCOPE, type_t) \
> | ^~~~~~~~~~~~
> src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
> 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
> | ^~~~~~~~~~
> src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
> 7 | KSEQ_INIT(gzFile, gzread)
> | ^~~~~~~~~
> src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function]
> 156 | SCOPE kseq_t *kseq_init(type_t fd) \
> | ^~~~~~~~~
> src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’
> 233 | __KSEQ_BASIC(SCOPE, type_t) \
> | ^~~~~~~~~~~~
> src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
> 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
> | ^~~~~~~~~~
> src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
> 7 | KSEQ_INIT(gzFile, gzread)
> | ^~~~~~~~~
> In file included from src/abpoa.h:5,
> from src/abpoa_align.h:4:
> src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
> 614 | static void *SIMDMalloc(size_t size, size_t align) {
> | ^~~~~~~~~~
> x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/abpoa_output.c -o build/temp.linux-x86_64-3.11/src/abpoa_output.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
> src/abpoa_output.c: In function ‘abpoa_multip_heaviest_bundling’:
> src/abpoa_output.c:492:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 492 | for (i = 0; i < n_clu; ++i) free(max_out_id[i]); free(max_out_id);
> | ^~~
> src/abpoa_output.c:492:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 492 | for (i = 0; i < n_clu; ++i) free(max_out_id[i]); free(max_out_id);
> | ^~~~
> src/abpoa_output.c: In function ‘abpoa_collect_clu_hap_read_ids’:
> src/abpoa_output.c:854:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 854 | for (i = 0; i < m_clu; ++i) free(clu_haps[i]); free(clu_haps); free(clu_size);
> | ^~~
> src/abpoa_output.c:854:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 854 | for (i = 0; i < m_clu; ++i) free(clu_haps[i]); free(clu_haps); free(clu_size);
> | ^~~~
> src/abpoa_output.c: In function ‘abpoa_generate_consensus’:
> src/abpoa_output.c:916:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 916 | for (i = 0; i < m_clu; ++i) free(clu_read_ids[i]); free(clu_read_ids);
> | ^~~
> src/abpoa_output.c:916:60: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 916 | for (i = 0; i < m_clu; ++i) free(clu_read_ids[i]); free(clu_read_ids);
> | ^~~~
> In file included from src/abpoa_seq.h:5,
> from src/abpoa_output.c:7:
> src/abpoa_seq.h: At top level:
> src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function]
> 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\
> | ^~~~~~~~~
> src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’
> 235 | __KSEQ_COPY(SCOPE)
> | ^~~~~~~~~~~
> src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
> 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
> | ^~~~~~~~~~
> src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
> 7 | KSEQ_INIT(gzFile, gzread)
> | ^~~~~~~~~
> src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function]
> 176 | SCOPE int kseq_read(kseq_t *seq) \
> | ^~~~~~~~~
> src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’
> 234 | __KSEQ_READ(SCOPE) \
> | ^~~~~~~~~~~
> src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
> 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
> | ^~~~~~~~~~
> src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
> 7 | KSEQ_INIT(gzFile, gzread)
> | ^~~~~~~~~
> src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function]
> 162 | SCOPE void kseq_destroy(kseq_t *ks) \
> | ^~~~~~~~~~~~
> src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’
> 233 | __KSEQ_BASIC(SCOPE, type_t) \
> | ^~~~~~~~~~~~
> src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
> 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
> | ^~~~~~~~~~
> src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
> 7 | KSEQ_INIT(gzFile, gzread)
> | ^~~~~~~~~
> src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function]
> 156 | SCOPE kseq_t *kseq_init(type_t fd) \
> | ^~~~~~~~~
> src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’
> 233 | __KSEQ_BASIC(SCOPE, type_t) \
> | ^~~~~~~~~~~~
> src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
> 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
> | ^~~~~~~~~~
> src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
> 7 | KSEQ_INIT(gzFile, gzread)
> | ^~~~~~~~~
> In file included from src/abpoa.h:5,
> from src/abpoa_output.c:4:
> src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
> 614 | static void *SIMDMalloc(size_t size, size_t align) {
> | ^~~~~~~~~~
> x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/abpoa_plot.c -o build/temp.linux-x86_64-3.11/src/abpoa_plot.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
> src/abpoa_plot.c: In function ‘abpoa_dump_pog’:
> src/abpoa_plot.c:111:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 111 | for (i = 0; i < abg->node_n; ++i) free(node_label[i]); free(node_label);
> | ^~~
> src/abpoa_plot.c:111:60: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 111 | for (i = 0; i < abg->node_n; ++i) free(node_label[i]); free(node_label);
> | ^~~~
> In file included from src/abpoa.h:5,
> from src/abpoa_plot.c:3:
> src/simd_instruction.h: At top level:
> src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
> 614 | static void *SIMDMalloc(size_t size, size_t align) {
> | ^~~~~~~~~~
> x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/abpoa_seed.c -o build/temp.linux-x86_64-3.11/src/abpoa_seed.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
> src/abpoa_seed.c: In function ‘abpoa_dp_chaining_of_local_chains’:
> src/abpoa_seed.c:396:44: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
> 396 | if ((local_chains[st].x) >> 63 != istrand) ++st;
> | ^~
> src/abpoa_seed.c: In function ‘abpoa_dp_chaining’:
> src/abpoa_seed.c:499:30: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
> 499 | if ((st_a >> 63) != i_tstrand || (int)((st_a >> 32) & 0x7fffffff) + max_dis < i_tpos) ++st;
> | ^~
> In file included from src/abpoa.h:5,
> from src/abpoa_seed.c:5:
> src/simd_instruction.h: At top level:
> src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
> 614 | static void *SIMDMalloc(size_t size, size_t align) {
> | ^~~~~~~~~~
> x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/abpoa_seq.c -o build/temp.linux-x86_64-3.11/src/abpoa_seq.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
> In file included from src/abpoa_seq.c:5:
> src/abpoa_align.h: In function ‘abpoa_push_cigar’:
> src/abpoa_align.h:56:103: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
> 56 | if (*n_cigar == 0 || (op != ABPOA_CINS && op != ABPOA_CSOFT_CLIP && op != ABPOA_CHARD_CLIP) || op != (cigar[(*n_cigar)-1] & 0xf)) {
> | ^~
> In file included from src/abpoa_seq.h:5,
> from src/abpoa_seq.c:4:
> src/abpoa_seq.h: At top level:
> src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function]
> 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\
> | ^~~~~~~~~
> src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’
> 235 | __KSEQ_COPY(SCOPE)
> | ^~~~~~~~~~~
> src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
> 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
> | ^~~~~~~~~~
> src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
> 7 | KSEQ_INIT(gzFile, gzread)
> | ^~~~~~~~~
> src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function]
> 162 | SCOPE void kseq_destroy(kseq_t *ks) \
> | ^~~~~~~~~~~~
> src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’
> 233 | __KSEQ_BASIC(SCOPE, type_t) \
> | ^~~~~~~~~~~~
> src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
> 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
> | ^~~~~~~~~~
> src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
> 7 | KSEQ_INIT(gzFile, gzread)
> | ^~~~~~~~~
> src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function]
> 156 | SCOPE kseq_t *kseq_init(type_t fd) \
> | ^~~~~~~~~
> src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’
> 233 | __KSEQ_BASIC(SCOPE, type_t) \
> | ^~~~~~~~~~~~
> src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’
> 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
> | ^~~~~~~~~~
> src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’
> 7 | KSEQ_INIT(gzFile, gzread)
> | ^~~~~~~~~
> In file included from src/abpoa.h:5,
> from src/abpoa_seq.h:4:
> src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
> 614 | static void *SIMDMalloc(size_t size, size_t align) {
> | ^~~~~~~~~~
> x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/kalloc.c -o build/temp.linux-x86_64-3.11/src/kalloc.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
> x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/kstring.c -o build/temp.linux-x86_64-3.11/src/kstring.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
> src/kstring.c: In function ‘kvsprintf’:
> src/kstring.c:15:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
> 15 | if (l + 1 > s->m - s->l) {
> | ^
> x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/simd_abpoa_align.c -o build/temp.linux-x86_64-3.11/src/simd_abpoa_align.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
> In file included from src/simd_abpoa_align.c:4:
> src/abpoa_align.h: In function ‘abpoa_push_cigar’:
> src/abpoa_align.h:56:103: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
> 56 | if (*n_cigar == 0 || (op != ABPOA_CINS && op != ABPOA_CSOFT_CLIP && op != ABPOA_CHARD_CLIP) || op != (cigar[(*n_cigar)-1] & 0xf)) {
> | ^~
> src/simd_abpoa_align.c: In function ‘abpoa_cg_global_align_sequence_to_graph_core’:
> src/simd_abpoa_align.c:1587:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 1587 | for (i = 1; i < pn; ++i) SUF_MIN[i] = SIMDShiftLeft(SUF_MIN[i-1], SIMDShiftOneNi32); SUF_MIN[pn] = SUF_MIN[pn-1];
> | ^~~
> src/simd_abpoa_align.c:1587:90: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 1587 | for (i = 1; i < pn; ++i) SUF_MIN[i] = SIMDShiftLeft(SUF_MIN[i-1], SIMDShiftOneNi32); SUF_MIN[pn] = SUF_MIN[pn-1];
> | ^~~~~~~
> src/simd_abpoa_align.c: In function ‘simd_abpoa_align_sequence_to_subgraph’:
> src/simd_abpoa_align.c:460:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 460 | for (i = 1; i < pn; ++i) \
> | ^~~
> src/simd_abpoa_align.c:539:5: note: in expansion of macro ‘simd_abpoa_var’
> 539 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \
> | ^~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1073:5: note: in expansion of macro ‘simd_abpoa_lg_var’
> 1073 | simd_abpoa_lg_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \
> | ^~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:461:66: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 461 | SUF_MIN[i] = SIMDShiftLeft(SUF_MIN[i-1], SIMDShiftOneN); SUF_MIN[pn] = SUF_MIN[pn-1]; \
> | ^~~~~~~
> src/simd_abpoa_align.c:539:5: note: in expansion of macro ‘simd_abpoa_var’
> 539 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \
> | ^~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1073:5: note: in expansion of macro ‘simd_abpoa_lg_var’
> 1073 | simd_abpoa_lg_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \
> | ^~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:534:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \
> | ^~~
> src/simd_abpoa_align.c:1097:5: note: in expansion of macro ‘simd_abpoa_free_var’
> 1097 | simd_abpoa_free_var; SIMDFree(GAP_E1S); \
> | ^~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:534:60: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \
> | ^~~~
> src/simd_abpoa_align.c:1097:5: note: in expansion of macro ‘simd_abpoa_free_var’
> 1097 | simd_abpoa_free_var; SIMDFree(GAP_E1S); \
> | ^~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:460:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 460 | for (i = 1; i < pn; ++i) \
> | ^~~
> src/simd_abpoa_align.c:544:5: note: in expansion of macro ‘simd_abpoa_var’
> 544 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \
> | ^~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1103:5: note: in expansion of macro ‘simd_abpoa_ag_var’
> 1103 | simd_abpoa_ag_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \
> | ^~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:461:66: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 461 | SUF_MIN[i] = SIMDShiftLeft(SUF_MIN[i-1], SIMDShiftOneN); SUF_MIN[pn] = SUF_MIN[pn-1]; \
> | ^~~~~~~
> src/simd_abpoa_align.c:544:5: note: in expansion of macro ‘simd_abpoa_var’
> 544 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \
> | ^~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1103:5: note: in expansion of macro ‘simd_abpoa_ag_var’
> 1103 | simd_abpoa_ag_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \
> | ^~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:534:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \
> | ^~~
> src/simd_abpoa_align.c:1126:5: note: in expansion of macro ‘simd_abpoa_free_var’
> 1126 | simd_abpoa_free_var; SIMDFree(GAP_E1S); \
> | ^~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:534:60: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \
> | ^~~~
> src/simd_abpoa_align.c:1126:5: note: in expansion of macro ‘simd_abpoa_free_var’
> 1126 | simd_abpoa_free_var; SIMDFree(GAP_E1S); \
> | ^~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:460:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 460 | for (i = 1; i < pn; ++i) \
> | ^~~
> src/simd_abpoa_align.c:549:5: note: in expansion of macro ‘simd_abpoa_var’
> 549 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \
> | ^~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1132:5: note: in expansion of macro ‘simd_abpoa_cg_var’
> 1132 | simd_abpoa_cg_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \
> | ^~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1694:13: note: in expansion of macro ‘simd_abpoa_cg_align_sequence_to_graph_core’
> 1694 | simd_abpoa_cg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:461:66: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 461 | SUF_MIN[i] = SIMDShiftLeft(SUF_MIN[i-1], SIMDShiftOneN); SUF_MIN[pn] = SUF_MIN[pn-1]; \
> | ^~~~~~~
> src/simd_abpoa_align.c:549:5: note: in expansion of macro ‘simd_abpoa_var’
> 549 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \
> | ^~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1132:5: note: in expansion of macro ‘simd_abpoa_cg_var’
> 1132 | simd_abpoa_cg_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \
> | ^~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1694:13: note: in expansion of macro ‘simd_abpoa_cg_align_sequence_to_graph_core’
> 1694 | simd_abpoa_cg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:534:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \
> | ^~~
> src/simd_abpoa_align.c:1156:5: note: in expansion of macro ‘simd_abpoa_free_var’
> 1156 | simd_abpoa_free_var; SIMDFree(GAP_E1S); SIMDFree(GAP_E2S); \
> | ^~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1694:13: note: in expansion of macro ‘simd_abpoa_cg_align_sequence_to_graph_core’
> 1694 | simd_abpoa_cg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:534:60: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \
> | ^~~~
> src/simd_abpoa_align.c:1156:5: note: in expansion of macro ‘simd_abpoa_free_var’
> 1156 | simd_abpoa_free_var; SIMDFree(GAP_E1S); SIMDFree(GAP_E2S); \
> | ^~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1694:13: note: in expansion of macro ‘simd_abpoa_cg_align_sequence_to_graph_core’
> 1694 | simd_abpoa_cg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:460:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 460 | for (i = 1; i < pn; ++i) \
> | ^~~
> src/simd_abpoa_align.c:539:5: note: in expansion of macro ‘simd_abpoa_var’
> 539 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \
> | ^~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1073:5: note: in expansion of macro ‘simd_abpoa_lg_var’
> 1073 | simd_abpoa_lg_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \
> | ^~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1699:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1699 | simd_abpoa_lg_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:461:66: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 461 | SUF_MIN[i] = SIMDShiftLeft(SUF_MIN[i-1], SIMDShiftOneN); SUF_MIN[pn] = SUF_MIN[pn-1]; \
> | ^~~~~~~
> src/simd_abpoa_align.c:539:5: note: in expansion of macro ‘simd_abpoa_var’
> 539 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \
> | ^~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1073:5: note: in expansion of macro ‘simd_abpoa_lg_var’
> 1073 | simd_abpoa_lg_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \
> | ^~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1699:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1699 | simd_abpoa_lg_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:534:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \
> | ^~~
> src/simd_abpoa_align.c:1097:5: note: in expansion of macro ‘simd_abpoa_free_var’
> 1097 | simd_abpoa_free_var; SIMDFree(GAP_E1S); \
> | ^~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1699:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1699 | simd_abpoa_lg_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:534:60: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \
> | ^~~~
> src/simd_abpoa_align.c:1097:5: note: in expansion of macro ‘simd_abpoa_free_var’
> 1097 | simd_abpoa_free_var; SIMDFree(GAP_E1S); \
> | ^~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1699:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1699 | simd_abpoa_lg_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:460:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 460 | for (i = 1; i < pn; ++i) \
> | ^~~
> src/simd_abpoa_align.c:544:5: note: in expansion of macro ‘simd_abpoa_var’
> 544 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \
> | ^~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1103:5: note: in expansion of macro ‘simd_abpoa_ag_var’
> 1103 | simd_abpoa_ag_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \
> | ^~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1702:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1702 | simd_abpoa_ag_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:461:66: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 461 | SUF_MIN[i] = SIMDShiftLeft(SUF_MIN[i-1], SIMDShiftOneN); SUF_MIN[pn] = SUF_MIN[pn-1]; \
> | ^~~~~~~
> src/simd_abpoa_align.c:544:5: note: in expansion of macro ‘simd_abpoa_var’
> 544 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \
> | ^~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1103:5: note: in expansion of macro ‘simd_abpoa_ag_var’
> 1103 | simd_abpoa_ag_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \
> | ^~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1702:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1702 | simd_abpoa_ag_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:534:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \
> | ^~~
> src/simd_abpoa_align.c:1126:5: note: in expansion of macro ‘simd_abpoa_free_var’
> 1126 | simd_abpoa_free_var; SIMDFree(GAP_E1S); \
> | ^~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1702:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1702 | simd_abpoa_ag_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:534:60: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \
> | ^~~~
> src/simd_abpoa_align.c:1126:5: note: in expansion of macro ‘simd_abpoa_free_var’
> 1126 | simd_abpoa_free_var; SIMDFree(GAP_E1S); \
> | ^~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1702:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1702 | simd_abpoa_ag_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:460:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 460 | for (i = 1; i < pn; ++i) \
> | ^~~
> src/simd_abpoa_align.c:549:5: note: in expansion of macro ‘simd_abpoa_var’
> 549 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \
> | ^~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1132:5: note: in expansion of macro ‘simd_abpoa_cg_var’
> 1132 | simd_abpoa_cg_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \
> | ^~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1705:13: note: in expansion of macro ‘simd_abpoa_cg_align_sequence_to_graph_core’
> 1705 | simd_abpoa_cg_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:461:66: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 461 | SUF_MIN[i] = SIMDShiftLeft(SUF_MIN[i-1], SIMDShiftOneN); SUF_MIN[pn] = SUF_MIN[pn-1]; \
> | ^~~~~~~
> src/simd_abpoa_align.c:549:5: note: in expansion of macro ‘simd_abpoa_var’
> 549 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \
> | ^~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1132:5: note: in expansion of macro ‘simd_abpoa_cg_var’
> 1132 | simd_abpoa_cg_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \
> | ^~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1705:13: note: in expansion of macro ‘simd_abpoa_cg_align_sequence_to_graph_core’
> 1705 | simd_abpoa_cg_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:534:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
> 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \
> | ^~~
> src/simd_abpoa_align.c:1156:5: note: in expansion of macro ‘simd_abpoa_free_var’
> 1156 | simd_abpoa_free_var; SIMDFree(GAP_E1S); SIMDFree(GAP_E2S); \
> | ^~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1705:13: note: in expansion of macro ‘simd_abpoa_cg_align_sequence_to_graph_core’
> 1705 | simd_abpoa_cg_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:534:60: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
> 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \
> | ^~~~
> src/simd_abpoa_align.c:1156:5: note: in expansion of macro ‘simd_abpoa_free_var’
> 1156 | simd_abpoa_free_var; SIMDFree(GAP_E1S); SIMDFree(GAP_E2S); \
> | ^~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1705:13: note: in expansion of macro ‘simd_abpoa_cg_align_sequence_to_graph_core’
> 1705 | simd_abpoa_cg_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/simd_check.c -o build/temp.linux-x86_64-3.11/src/simd_check.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
> In file included from src/simd_check.c:1:
> src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function]
> 614 | static void *SIMDMalloc(size_t size, size_t align) {
> | ^~~~~~~~~~
> x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/utils.c -o build/temp.linux-x86_64-3.11/src/utils.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES
> x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES build/temp.linux-x86_64-3.11/python/pyabpoa.o build/temp.linux-x86_64-3.11/src/abpoa_align.o build/temp.linux-x86_64-3.11/src/abpoa_graph.o build/temp.linux-x86_64-3.11/src/abpoa_output.o build/temp.linux-x86_64-3.11/src/abpoa_plot.o build/temp.linux-x86_64-3.11/src/abpoa_seed.o build/temp.linux-x86_64-3.11/src/abpoa_seq.o build/temp.linux-x86_64-3.11/src/kalloc.o build/temp.linux-x86_64-3.11/src/kstring.o build/temp.linux-x86_64-3.11/src/simd_abpoa_align.o build/temp.linux-x86_64-3.11/src/simd_check.o build/temp.linux-x86_64-3.11/src/utils.o -lz -lm -lpthread -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_pyabpoa/build/pyabpoa.cpython-311-x86_64-linux-gnu.so
> debian/rules execute_after_dh_auto_build
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> set -e \
> ; for SIMDE in avx2 avx sse4.1 ssse3 sse3 \
> ; do CFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -m${SIMDE}" \
> CXXFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -m${SIMDE}" \
> dh_auto_build --buildsystem=makefile -- all \
> ; mv -v bin/abpoa bin/abpoa.${SIMDE} \
> ; dh_auto_clean --buildsystem=makefile -- clean \
> ; done
> make -j8 "INSTALL=install --strip-program=true" all
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> make[2]: Nothing to be done for 'all'.
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> renamed 'bin/abpoa' -> 'bin/abpoa.avx2'
> make -j8 clean clean
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> rm -f ./src/*.[oa] ./lib/*.[oa] ./bin/abpoa
> make[2]: 'clean' is up to date.
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> make -j8 "INSTALL=install --strip-program=true" all
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/abpoa.c -o src/abpoa.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_align.c -I./include -o src/abpoa_align.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_graph.c -I./include -o src/abpoa_graph.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_plot.c -I./include -o src/abpoa_plot.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seed.c -I./include -o src/abpoa_seed.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seq.c -I./include -o src/abpoa_seq.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_output.c -I./include -o src/abpoa_output.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kalloc.c -I./include -o src/kalloc.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kstring.c -I./include -o src/kstring.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_abpoa_align.c -o src/simd_abpoa_align.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_check.c -o src/simd_check.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/utils.c -I./include -o src/utils.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> src/simd_abpoa_align.c: In function ‘simd_abpoa_align_sequence_to_subgraph’:
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> if [ ! -d ./lib ]; then mkdir ./lib; fi
> ar -csr lib/libabpoa.a ./src/abpoa_align.o ./src/abpoa_graph.o ./src/abpoa_plot.o ./src/abpoa_seed.o ./src/abpoa_seq.o ./src/abpoa_output.o ./src/kalloc.o ./src/kstring.o ./src/simd_abpoa_align.o ./src/simd_check.o ./src/utils.o
> if [ ! -d ./bin ]; then mkdir ./bin; fi
> cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa.o -I./include -L./lib -labpoa -lm -lz -lpthread -o bin/abpoa
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> renamed 'bin/abpoa' -> 'bin/abpoa.avx'
> make -j8 clean clean
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> rm -f ./src/*.[oa] ./lib/*.[oa] ./bin/abpoa
> make[2]: 'clean' is up to date.
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> make -j8 "INSTALL=install --strip-program=true" all
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/abpoa.c -o src/abpoa.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_align.c -I./include -o src/abpoa_align.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_graph.c -I./include -o src/abpoa_graph.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_plot.c -I./include -o src/abpoa_plot.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seed.c -I./include -o src/abpoa_seed.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seq.c -I./include -o src/abpoa_seq.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_output.c -I./include -o src/abpoa_output.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kalloc.c -I./include -o src/kalloc.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kstring.c -I./include -o src/kstring.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_abpoa_align.c -o src/simd_abpoa_align.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_check.c -o src/simd_check.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/utils.c -I./include -o src/utils.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> src/simd_abpoa_align.c: In function ‘simd_abpoa_align_sequence_to_subgraph’:
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> if [ ! -d ./lib ]; then mkdir ./lib; fi
> ar -csr lib/libabpoa.a ./src/abpoa_align.o ./src/abpoa_graph.o ./src/abpoa_plot.o ./src/abpoa_seed.o ./src/abpoa_seq.o ./src/abpoa_output.o ./src/kalloc.o ./src/kstring.o ./src/simd_abpoa_align.o ./src/simd_check.o ./src/utils.o
> if [ ! -d ./bin ]; then mkdir ./bin; fi
> cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa.o -I./include -L./lib -labpoa -lm -lz -lpthread -o bin/abpoa
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> renamed 'bin/abpoa' -> 'bin/abpoa.sse4.1'
> make -j8 clean clean
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> rm -f ./src/*.[oa] ./lib/*.[oa] ./bin/abpoa
> make[2]: 'clean' is up to date.
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> make -j8 "INSTALL=install --strip-program=true" all
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/abpoa.c -o src/abpoa.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_align.c -I./include -o src/abpoa_align.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_graph.c -I./include -o src/abpoa_graph.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_plot.c -I./include -o src/abpoa_plot.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seed.c -I./include -o src/abpoa_seed.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seq.c -I./include -o src/abpoa_seq.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_output.c -I./include -o src/abpoa_output.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kalloc.c -I./include -o src/kalloc.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kstring.c -I./include -o src/kstring.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_abpoa_align.c -o src/simd_abpoa_align.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_check.c -o src/simd_check.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/utils.c -I./include -o src/utils.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> src/simd_abpoa_align.c: In function ‘simd_abpoa_align_sequence_to_subgraph’:
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> if [ ! -d ./lib ]; then mkdir ./lib; fi
> ar -csr lib/libabpoa.a ./src/abpoa_align.o ./src/abpoa_graph.o ./src/abpoa_plot.o ./src/abpoa_seed.o ./src/abpoa_seq.o ./src/abpoa_output.o ./src/kalloc.o ./src/kstring.o ./src/simd_abpoa_align.o ./src/simd_check.o ./src/utils.o
> if [ ! -d ./bin ]; then mkdir ./bin; fi
> cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa.o -I./include -L./lib -labpoa -lm -lz -lpthread -o bin/abpoa
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> renamed 'bin/abpoa' -> 'bin/abpoa.ssse3'
> make -j8 clean clean
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> rm -f ./src/*.[oa] ./lib/*.[oa] ./bin/abpoa
> make[2]: 'clean' is up to date.
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> make -j8 "INSTALL=install --strip-program=true" all
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/abpoa.c -o src/abpoa.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_align.c -I./include -o src/abpoa_align.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_graph.c -I./include -o src/abpoa_graph.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_plot.c -I./include -o src/abpoa_plot.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seed.c -I./include -o src/abpoa_seed.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seq.c -I./include -o src/abpoa_seq.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_output.c -I./include -o src/abpoa_output.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kalloc.c -I./include -o src/kalloc.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kstring.c -I./include -o src/kstring.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_abpoa_align.c -o src/simd_abpoa_align.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_check.c -o src/simd_check.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/utils.c -I./include -o src/utils.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> src/simd_abpoa_align.c: In function ‘simd_abpoa_align_sequence_to_subgraph’:
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> if [ ! -d ./lib ]; then mkdir ./lib; fi
> ar -csr lib/libabpoa.a ./src/abpoa_align.o ./src/abpoa_graph.o ./src/abpoa_plot.o ./src/abpoa_seed.o ./src/abpoa_seq.o ./src/abpoa_output.o ./src/kalloc.o ./src/kstring.o ./src/simd_abpoa_align.o ./src/simd_check.o ./src/utils.o
> if [ ! -d ./bin ]; then mkdir ./bin; fi
> cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa.o -I./include -L./lib -labpoa -lm -lz -lpthread -o bin/abpoa
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> renamed 'bin/abpoa' -> 'bin/abpoa.sse3'
> make -j8 clean clean
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> rm -f ./src/*.[oa] ./lib/*.[oa] ./bin/abpoa
> make[2]: 'clean' is up to date.
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_auto_build --buildsystem=makefile -- all
> make -j8 "INSTALL=install --strip-program=true" all
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/abpoa.c -o src/abpoa.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_align.c -I./include -o src/abpoa_align.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_graph.c -I./include -o src/abpoa_graph.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_plot.c -I./include -o src/abpoa_plot.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seed.c -I./include -o src/abpoa_seed.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seq.c -I./include -o src/abpoa_seq.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_output.c -I./include -o src/abpoa_output.o
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kalloc.c -I./include -o src/kalloc.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kstring.c -I./include -o src/kstring.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_abpoa_align.c -o src/simd_abpoa_align.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_check.c -o src/simd_check.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/utils.c -I./include -o src/utils.o
> cc1: warning: command-line option ‘-frelease’ is valid for D but not for C
> src/simd_abpoa_align.c: In function ‘simd_abpoa_align_sequence_to_subgraph’:
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’
> 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
> 1053 | if (_dp_h[i] > max) { \
> | ~~~~~^~~
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
> 1054 | max = _dp_h[i]; max_i = _qi[i]; \
> | ~~~^~~
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here
> 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \
> | ^
> src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’
> 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \
> | ^~~~~~~~~~~~~~~~~~~~~
> src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’
> 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> if [ ! -d ./lib ]; then mkdir ./lib; fi
> ar -csr lib/libabpoa.a ./src/abpoa_align.o ./src/abpoa_graph.o ./src/abpoa_plot.o ./src/abpoa_seed.o ./src/abpoa_seq.o ./src/abpoa_output.o ./src/kalloc.o ./src/kstring.o ./src/simd_abpoa_align.o ./src/simd_check.o ./src/utils.o
> if [ ! -d ./bin ]; then mkdir ./bin; fi
> cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa.o -I./include -L./lib -labpoa -lm -lz -lpthread -o bin/abpoa
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> mv -v bin/abpoa bin/abpoa.generic
> renamed 'bin/abpoa' -> 'bin/abpoa.generic'
> cp debian/abpoa-dispatch.sh bin/abpoa
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> debian/rules override_dh_auto_test
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> # Tests from the README.md document
> ./bin/abpoa ./test_data/seq.fa > cons.fa
> ./bin/abpoa.avx2: 19: exec: ./bin/abpoa.avx2.generic: not found
> make[1]: *** [debian/rules:34: override_dh_auto_test] Error 127
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> make: *** [debian/rules:14: binary] Error 2
> dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -b' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/16/abpoa_1.4.1-3_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
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