[Debian-med-packaging] Bug#1049808: biosquid: Fails to build binary packages again after successful build
Lucas Nussbaum
lucas at debian.org
Wed Aug 16 09:26:37 BST 2023
Source: biosquid
Version: 1.9g+cvs20050121-12
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-binary-20230816 ftbfs-binary-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild
Hi,
This package fails to do build a binary-only build (not source) after a
successful build (dpkg-buildpackage ; dpkg-buildpackage -b).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/DoubleBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -b
> ----------------------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package biosquid
> dpkg-buildpackage: info: source version 1.9g+cvs20050121-12
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Andreas Tille <tille at debian.org>
> dpkg-source --before-build .
> dpkg-buildpackage: info: host architecture amd64
> debian/rules clean
> dh clean
> rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1.debhelper.log
> debian/rules override_dh_auto_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_clean
> make -j8 distclean
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> test -z "libsquid.la" || rm -f libsquid.la
> rm -rf .libs _libs
> rm -f *.o
> rm -f afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight
> rm -f *.lo
> rm -f *.tab.c
> test -z "Testsuite/Makefile squid.h libsquid.pc" || rm -f Testsuite/Makefile squid.h libsquid.pc
> rm -f squidconf.h stamp-h1
> rm -f ./so_locations
> rm -f libtool config.lt
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f
> rm -f cscope.out cscope.in.out cscope.po.out cscope.files
> rm -f config.status config.cache config.log configure.lineno config.status.lineno
> rm -f ./.deps/afetch_main.Po
> rm -f ./.deps/aligneval.Po
> rm -f ./.deps/alistat_main.Po
> rm -f ./.deps/cluster.Po
> rm -f ./.deps/compalign_main.Po
> rm -f ./.deps/compstruct_main.Po
> rm -f ./.deps/eps.Po
> rm -f ./.deps/iupac.Po
> rm -f ./.deps/libsquid_la-a2m.Plo
> rm -f ./.deps/libsquid_la-aligneval.Plo
> rm -f ./.deps/libsquid_la-alignio.Plo
> rm -f ./.deps/libsquid_la-clustal.Plo
> rm -f ./.deps/libsquid_la-cluster.Plo
> rm -f ./.deps/libsquid_la-dayhoff.Plo
> rm -f ./.deps/libsquid_la-dirichlet.Plo
> rm -f ./.deps/libsquid_la-eps.Plo
> rm -f ./.deps/libsquid_la-file.Plo
> rm -f ./.deps/libsquid_la-getopt.Plo
> rm -f ./.deps/libsquid_la-gki.Plo
> rm -f ./.deps/libsquid_la-hsregex.Plo
> rm -f ./.deps/libsquid_la-iupac.Plo
> rm -f ./.deps/libsquid_la-msa.Plo
> rm -f ./.deps/libsquid_la-msf.Plo
> rm -f ./.deps/libsquid_la-phylip.Plo
> rm -f ./.deps/libsquid_la-revcomp.Plo
> rm -f ./.deps/libsquid_la-rk.Plo
> rm -f ./.deps/libsquid_la-selex.Plo
> rm -f ./.deps/libsquid_la-seqencode.Plo
> rm -f ./.deps/libsquid_la-shuffle.Plo
> rm -f ./.deps/libsquid_la-sqerror.Plo
> rm -f ./.deps/libsquid_la-sqio.Plo
> rm -f ./.deps/libsquid_la-squidcore.Plo
> rm -f ./.deps/libsquid_la-sre_ctype.Plo
> rm -f ./.deps/libsquid_la-sre_math.Plo
> rm -f ./.deps/libsquid_la-sre_random.Plo
> rm -f ./.deps/libsquid_la-sre_stack.Plo
> rm -f ./.deps/libsquid_la-sre_string.Plo
> rm -f ./.deps/libsquid_la-ssi.Plo
> rm -f ./.deps/libsquid_la-stockholm.Plo
> rm -f ./.deps/libsquid_la-stopwatch.Plo
> rm -f ./.deps/libsquid_la-translate.Plo
> rm -f ./.deps/libsquid_la-types.Plo
> rm -f ./.deps/libsquid_la-vectorops.Plo
> rm -f ./.deps/libsquid_la-weight.Plo
> rm -f ./.deps/libsquid_la-wuss.Plo
> rm -f ./.deps/revcomp.Po
> rm -f ./.deps/revcomp_main.Po
> rm -f ./.deps/seqsplit_main.Po
> rm -f ./.deps/seqstat_main.Po
> rm -f ./.deps/sfetch_main.Po
> rm -f ./.deps/shuffle.Po
> rm -f ./.deps/shuffle_main.Po
> rm -f ./.deps/sindex_main.Po
> rm -f ./.deps/sre_math.Po
> rm -f ./.deps/sre_stack.Po
> rm -f ./.deps/sreformat_main.Po
> rm -f ./.deps/translate.Po
> rm -f ./.deps/translate_main.Po
> rm -f ./.deps/weight.Po
> rm -f ./.deps/weight_main.Po
> rm -f ./.deps/wuss.Po
> rm -f Makefile
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> rm -f configure
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_autoreconf_clean
> rm -f -- ./install-sh ./squidconf.h.in\~ ./aclocal.m4 ./config.guess ./autom4te.cache/requests ./autom4te.cache/traces.2 ./autom4te.cache/output.2 ./autom4te.cache/output.1 ./autom4te.cache/traces.1 ./autom4te.cache/output.0 ./autom4te.cache/traces.0 ./Makefile.in ./compile ./ltmain.sh ./configure ./depcomp ./squidconf.h.in ./missing
> rm -f debian/autoreconf.before debian/autoreconf.after
> dh_clean
> rm -f debian/debhelper-build-stamp
> cp -an --reflink=auto debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153 debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp
> mv debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp config.sub
> rm -f debian/.debhelper/bucket/index
> rm -rf debian/.debhelper/
> rm -f -- debian/biosquid.substvars debian/libsquid1.substvars debian/libsquid-dev.substvars debian/files
> rm -fr -- debian/biosquid/ debian/tmp/ debian/libsquid1/ debian/libsquid-dev/
> find . \( \( \
> \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
> \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
> -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
> -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
> -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
> \) -exec rm -f {} + \) -o \
> \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
> debian/rules binary
> dh binary
> dh_update_autotools_config
> cp -an --reflink=auto config.sub debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp
> mv debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153
> cp -f /usr/share/misc/config.sub ./config.sub
> dh_autoreconf
> find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p
> " > debian/autoreconf.before
> grep -q ^XDT_ configure.ac
> autoreconf -f -i
> configure.ac:145: warning: underquoted definition of SQ_ARITHMETIC_FPOS_T
> configure.ac:145: run info Automake 'Extending aclocal'
> configure.ac:145: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal
> libtoolize: putting auxiliary files in '.'.
> libtoolize: copying file './ltmain.sh'
> libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac,
> libtoolize: and rerunning libtoolize and aclocal.
> libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
> libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT'
> configure.ac:145: warning: underquoted definition of SQ_ARITHMETIC_FPOS_T
> configure.ac:145: run info Automake 'Extending aclocal'
> configure.ac:145: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal
> configure.ac:47: warning: The macro `AC_CONFIG_HEADER' is obsolete.
> configure.ac:47: You should run autoupdate.
> ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from...
> configure.ac:47: the top level
> configure.ac:77: warning: The macro `AC_PROG_LIBTOOL' is obsolete.
> configure.ac:77: You should run autoupdate.
> aclocal.m4:122: AC_PROG_LIBTOOL is expanded from...
> configure.ac:77: the top level
> configure.ac:154: warning: The macro `AC_TRY_COMPILE' is obsolete.
> configure.ac:154: You should run autoupdate.
> ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
> configure.ac:145: SQ_ARITHMETIC_FPOS_T is expanded from...
> configure.ac:154: the top level
> configure.ac:169: warning: The macro `AC_TRY_COMPILE' is obsolete.
> configure.ac:169: You should run autoupdate.
> ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
> lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
> ./lib/autoconf/functions.m4:66: AC_CHECK_FUNC is expanded from...
> configure.ac:169: the top level
> configure.ac:75: installing './compile'
> configure.ac:77: installing './config.guess'
> configure.ac:40: installing './install-sh'
> configure.ac:40: installing './missing'
> Makefile.am: installing './depcomp'
> find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p
> " > debian/autoreconf.after
> debian/rules override_dh_auto_configure
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> # autoreconf && true
> autoconf
> configure.ac:47: warning: The macro `AC_CONFIG_HEADER' is obsolete.
> configure.ac:47: You should run autoupdate.
> ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from...
> configure.ac:47: the top level
> configure.ac:77: warning: The macro `AC_PROG_LIBTOOL' is obsolete.
> configure.ac:77: You should run autoupdate.
> aclocal.m4:122: AC_PROG_LIBTOOL is expanded from...
> configure.ac:77: the top level
> configure.ac:154: warning: The macro `AC_TRY_COMPILE' is obsolete.
> configure.ac:154: You should run autoupdate.
> ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
> configure.ac:145: SQ_ARITHMETIC_FPOS_T is expanded from...
> configure.ac:154: the top level
> configure.ac:169: warning: The macro `AC_TRY_COMPILE' is obsolete.
> configure.ac:169: You should run autoupdate.
> ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
> lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
> ./lib/autoconf/functions.m4:66: AC_CHECK_FUNC is expanded from...
> configure.ac:169: the top level
> dh_auto_configure -- --enable-lfs # --enable-pvm
> ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-lfs
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for a race-free mkdir -p... /bin/mkdir -p
> checking for gawk... no
> checking for mawk... mawk
> checking whether make sets $(MAKE)... yes
> checking whether make supports nested variables... yes
> checking whether UID '1001' is supported by ustar format... yes
> checking whether GID '1001' is supported by ustar format... yes
> checking how to create a ustar tar archive... gnutar
> configure: configuring the SQUID library for your system.
> checking for gcc... gcc
> checking whether the C compiler works... yes
> checking for C compiler default output file name... a.out
> checking for suffix of executables...
> checking whether we are cross compiling... no
> checking for suffix of object files... o
> checking whether the compiler supports GNU C... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to enable C11 features... none needed
> checking whether gcc understands -c and -o together... yes
> checking whether make supports the include directive... yes (GNU style)
> checking dependency style of gcc... none
> checking for ranlib... ranlib
> checking build system type... x86_64-pc-linux-gnu
> checking host system type... x86_64-pc-linux-gnu
> checking how to print strings... printf
> checking for a sed that does not truncate output... /bin/sed
> checking for grep that handles long lines and -e... /bin/grep
> checking for egrep... /bin/grep -E
> checking for fgrep... /bin/grep -F
> checking for ld used by gcc... /usr/bin/ld
> checking if the linker (/usr/bin/ld) is GNU ld... yes
> checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
> checking the name lister (/usr/bin/nm -B) interface... BSD nm
> checking whether ln -s works... yes
> checking the maximum length of command line arguments... 1572864
> checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
> checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
> checking for /usr/bin/ld option to reload object files... -r
> checking for file... file
> checking for objdump... objdump
> checking how to recognize dependent libraries... pass_all
> checking for dlltool... no
> checking how to associate runtime and link libraries... printf %s\n
> checking for ar... ar
> checking for archiver @FILE support... @
> checking for strip... strip
> checking for ranlib... (cached) ranlib
> checking command to parse /usr/bin/nm -B output from gcc object... ok
> checking for sysroot... no
> checking for a working dd... /bin/dd
> checking how to truncate binary pipes... /bin/dd bs=4096 count=1
> checking for mt... no
> checking if : is a manifest tool... no
> checking for stdio.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for strings.h... yes
> checking for sys/stat.h... yes
> checking for sys/types.h... yes
> checking for unistd.h... yes
> checking for dlfcn.h... yes
> checking for objdir... .libs
> checking if gcc supports -fno-rtti -fno-exceptions... no
> checking for gcc option to produce PIC... -fPIC -DPIC
> checking if gcc PIC flag -fPIC -DPIC works... yes
> checking if gcc static flag -static works... yes
> checking if gcc supports -c -o file.o... yes
> checking if gcc supports -c -o file.o... (cached) yes
> checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
> checking whether -lc should be explicitly linked in... no
> checking dynamic linker characteristics... GNU/Linux ld.so
> checking how to hardcode library paths into programs... immediate
> checking whether stripping libraries is possible... yes
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... yes
> checking whether to build static libraries... yes
> checking for ar... /usr/bin/ar
> checking whether byte ordering is bigendian... no
> checking for ntohs... yes
> checking for ntohl... yes
> checking for htons... yes
> checking for htonl... yes
> checking size of unsigned short... 2
> checking size of unsigned int... 4
> checking size of unsigned long... 8
> checking size of unsigned long long... 8
> checking for strtoul... yes
> checking for strtoull... yes
> checking whether fpos_t is an arithmetic datatype... no.
> checking for strtoull... (cached) yes
> checking for ftello... yes
> checking for fseeko... yes
> checking for ftello64... yes
> checking for fseeko64... yes
> checking for ftell64... no
> checking for fseek64... no
> checking for stat64... yes
> checking for struct stat64... no!
> checking size of off_t... 8
> checking size of off64_t... 0
> checking size of fpos_t... 16
> configure: configured for optional LFS, large file support
> checking that generated files are newer than configure... done
> configure: creating ./config.status
> config.status: creating Makefile
> config.status: creating Testsuite/Makefile
> config.status: creating squid.h
> config.status: creating libsquid.pc
> config.status: creating squidconf.h
> config.status: executing depfiles commands
> config.status: executing libtool commands
> # avoid duplicated definition of PACKAGE_NAME (basically conflicting with hmmer2 when used together)
> sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \
> -e '/^#define PACKAGE_NAME /a #endif' \
> -e '/^#define PACKAGE_VERSION /i #ifndef PACKAGE_VERSION' \
> -e '/^#define PACKAGE_VERSION /a #endif' \
> -e '/^#define _LARGEFILE_SOURCE /i #ifndef _LARGEFILE_SOURCE' \
> -e '/^#define _LARGEFILE_SOURCE /a #endif' \
> -e '/^#define _LARGEFILE64_SOURCE /i #ifndef _LARGEFILE64_SOURCE' \
> -e '/^#define _LARGEFILE64_SOURCE /a #endif' \
> -e '/^#define VERSION /i #ifndef VERSION' \
> -e '/^#define VERSION /a #endif' \
> squidconf.h
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_auto_build
> make -j8
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> make all-am
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o afetch_main.o afetch_main.c
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-a2m.lo `test -f 'a2m.c' || echo './'`a2m.c
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-alignio.lo `test -f 'alignio.c' || echo './'`alignio.c
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-clustal.lo `test -f 'clustal.c' || echo './'`clustal.c
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-file.lo `test -f 'file.c' || echo './'`file.c
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-getopt.lo `test -f 'getopt.c' || echo './'`getopt.c
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-gki.lo `test -f 'gki.c' || echo './'`gki.c
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-hsregex.lo `test -f 'hsregex.c' || echo './'`hsregex.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c a2m.c -fPIC -DPIC -o .libs/libsquid_la-a2m.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c hsregex.c -fPIC -DPIC -o .libs/libsquid_la-hsregex.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c file.c -fPIC -DPIC -o .libs/libsquid_la-file.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c getopt.c -fPIC -DPIC -o .libs/libsquid_la-getopt.o
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-msa.lo `test -f 'msa.c' || echo './'`msa.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal.c -fPIC -DPIC -o .libs/libsquid_la-clustal.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c gki.c -fPIC -DPIC -o .libs/libsquid_la-gki.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignio.c -fPIC -DPIC -o .libs/libsquid_la-alignio.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c a2m.c -o libsquid_la-a2m.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal.c -o libsquid_la-clustal.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c getopt.c -o libsquid_la-getopt.o >/dev/null 2>&1
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-msf.lo `test -f 'msf.c' || echo './'`msf.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c msa.c -fPIC -DPIC -o .libs/libsquid_la-msa.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c gki.c -o libsquid_la-gki.o >/dev/null 2>&1
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-phylip.lo `test -f 'phylip.c' || echo './'`phylip.c
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-selex.lo `test -f 'selex.c' || echo './'`selex.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c file.c -o libsquid_la-file.o >/dev/null 2>&1
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sqerror.lo `test -f 'sqerror.c' || echo './'`sqerror.c
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sqio.lo `test -f 'sqio.c' || echo './'`sqio.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c msf.c -fPIC -DPIC -o .libs/libsquid_la-msf.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignio.c -o libsquid_la-alignio.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylip.c -fPIC -DPIC -o .libs/libsquid_la-phylip.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c selex.c -fPIC -DPIC -o .libs/libsquid_la-selex.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c hsregex.c -o libsquid_la-hsregex.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c sqerror.c -fPIC -DPIC -o .libs/libsquid_la-sqerror.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c sqio.c -fPIC -DPIC -o .libs/libsquid_la-sqio.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylip.c -o libsquid_la-phylip.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c sqerror.c -o libsquid_la-sqerror.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c msf.c -o libsquid_la-msf.o >/dev/null 2>&1
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-squidcore.lo `test -f 'squidcore.c' || echo './'`squidcore.c
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sre_ctype.lo `test -f 'sre_ctype.c' || echo './'`sre_ctype.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c msa.c -o libsquid_la-msa.o >/dev/null 2>&1
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sre_random.lo `test -f 'sre_random.c' || echo './'`sre_random.c
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sre_string.lo `test -f 'sre_string.c' || echo './'`sre_string.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c selex.c -o libsquid_la-selex.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c squidcore.c -fPIC -DPIC -o .libs/libsquid_la-squidcore.o
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-ssi.lo `test -f 'ssi.c' || echo './'`ssi.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_ctype.c -fPIC -DPIC -o .libs/libsquid_la-sre_ctype.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c squidcore.c -o libsquid_la-squidcore.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_ctype.c -o libsquid_la-sre_ctype.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_random.c -fPIC -DPIC -o .libs/libsquid_la-sre_random.o
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-stockholm.lo `test -f 'stockholm.c' || echo './'`stockholm.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_string.c -fPIC -DPIC -o .libs/libsquid_la-sre_string.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c ssi.c -fPIC -DPIC -o .libs/libsquid_la-ssi.o
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-types.lo `test -f 'types.c' || echo './'`types.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c stockholm.c -fPIC -DPIC -o .libs/libsquid_la-stockholm.o
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-vectorops.lo `test -f 'vectorops.c' || echo './'`vectorops.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_random.c -o libsquid_la-sre_random.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c sqio.c -o libsquid_la-sqio.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_string.c -o libsquid_la-sre_string.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c types.c -fPIC -DPIC -o .libs/libsquid_la-types.o
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-aligneval.lo `test -f 'aligneval.c' || echo './'`aligneval.c
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-cluster.lo `test -f 'cluster.c' || echo './'`cluster.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c vectorops.c -fPIC -DPIC -o .libs/libsquid_la-vectorops.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c types.c -o libsquid_la-types.o >/dev/null 2>&1
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-dayhoff.lo `test -f 'dayhoff.c' || echo './'`dayhoff.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c aligneval.c -fPIC -DPIC -o .libs/libsquid_la-aligneval.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c cluster.c -fPIC -DPIC -o .libs/libsquid_la-cluster.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c ssi.c -o libsquid_la-ssi.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c dayhoff.c -fPIC -DPIC -o .libs/libsquid_la-dayhoff.o
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-dirichlet.lo `test -f 'dirichlet.c' || echo './'`dirichlet.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c vectorops.c -o libsquid_la-vectorops.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c stockholm.c -o libsquid_la-stockholm.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c dayhoff.c -o libsquid_la-dayhoff.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c aligneval.c -o libsquid_la-aligneval.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c dirichlet.c -fPIC -DPIC -o .libs/libsquid_la-dirichlet.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c cluster.c -o libsquid_la-cluster.o >/dev/null 2>&1
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-eps.lo `test -f 'eps.c' || echo './'`eps.c
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-iupac.lo `test -f 'iupac.c' || echo './'`iupac.c
> dirichlet.c: In function ‘AllocDirichlet’:
> dirichlet.c:375:3: warning: ‘__builtin_strcpy’ writing one too many bytes into a region of a size that depends on ‘strlen’ [-Wstringop-overflow=]
> 375 | strcpy(d->alphabet, alphabet);
> | ^
> dirichlet.c:374:17: note: destination object of size [0, 2147483647] allocated by ‘malloc’
> 374 | d->alphabet = malloc(sizeof(char) * d->K);
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-revcomp.lo `test -f 'revcomp.c' || echo './'`revcomp.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c dirichlet.c -o libsquid_la-dirichlet.o >/dev/null 2>&1
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-rk.lo `test -f 'rk.c' || echo './'`rk.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c iupac.c -fPIC -DPIC -o .libs/libsquid_la-iupac.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c eps.c -fPIC -DPIC -o .libs/libsquid_la-eps.o
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-seqencode.lo `test -f 'seqencode.c' || echo './'`seqencode.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c iupac.c -o libsquid_la-iupac.o >/dev/null 2>&1
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-shuffle.lo `test -f 'shuffle.c' || echo './'`shuffle.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c revcomp.c -fPIC -DPIC -o .libs/libsquid_la-revcomp.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c eps.c -o libsquid_la-eps.o >/dev/null 2>&1
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sre_math.lo `test -f 'sre_math.c' || echo './'`sre_math.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c seqencode.c -fPIC -DPIC -o .libs/libsquid_la-seqencode.o
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sre_stack.lo `test -f 'sre_stack.c' || echo './'`sre_stack.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c rk.c -fPIC -DPIC -o .libs/libsquid_la-rk.o
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-stopwatch.lo `test -f 'stopwatch.c' || echo './'`stopwatch.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c revcomp.c -o libsquid_la-revcomp.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c shuffle.c -fPIC -DPIC -o .libs/libsquid_la-shuffle.o
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-translate.lo `test -f 'translate.c' || echo './'`translate.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_math.c -fPIC -DPIC -o .libs/libsquid_la-sre_math.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c rk.c -o libsquid_la-rk.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c seqencode.c -o libsquid_la-seqencode.o >/dev/null 2>&1
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-weight.lo `test -f 'weight.c' || echo './'`weight.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_stack.c -fPIC -DPIC -o .libs/libsquid_la-sre_stack.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c stopwatch.c -fPIC -DPIC -o .libs/libsquid_la-stopwatch.o
> /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-wuss.lo `test -f 'wuss.c' || echo './'`wuss.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -fPIC -DPIC -o .libs/libsquid_la-translate.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_math.c -o libsquid_la-sre_math.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_stack.c -o libsquid_la-sre_stack.o >/dev/null 2>&1
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alistat_main.o alistat_main.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c stopwatch.c -o libsquid_la-stopwatch.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -o libsquid_la-translate.o >/dev/null 2>&1
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c weight.c -fPIC -DPIC -o .libs/libsquid_la-weight.o
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c shuffle.c -o libsquid_la-shuffle.o >/dev/null 2>&1
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o aligneval.o aligneval.c
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cluster.o cluster.c
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sre_math.o sre_math.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c wuss.c -fPIC -DPIC -o .libs/libsquid_la-wuss.o
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sre_stack.o sre_stack.c
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o compalign_main.o compalign_main.c
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o compstruct_main.o compstruct_main.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c wuss.c -o libsquid_la-wuss.o >/dev/null 2>&1
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o wuss.o wuss.c
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o revcomp_main.o revcomp_main.c
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o revcomp.o revcomp.c
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o shuffle.o shuffle.c
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o seqsplit_main.o seqsplit_main.c
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o seqstat_main.o seqstat_main.c
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sfetch_main.o sfetch_main.c
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o shuffle_main.o shuffle_main.c
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iupac.o iupac.c
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sindex_main.o sindex_main.c
> libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c weight.c -o libsquid_la-weight.o >/dev/null 2>&1
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sreformat_main.o sreformat_main.c
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eps.o eps.c
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o translate_main.o translate_main.c
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o translate.o translate.c
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o weight_main.o weight_main.c
> gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o weight.o weight.c
> /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0 -Wl,-z,relro -Wl,-z,now -o libsquid.la -rpath /usr/lib/x86_64-linux-gnu libsquid_la-a2m.lo libsquid_la-alignio.lo libsquid_la-clustal.lo libsquid_la-file.lo libsquid_la-getopt.lo libsquid_la-gki.lo libsquid_la-hsregex.lo libsquid_la-msa.lo libsquid_la-msf.lo libsquid_la-phylip.lo libsquid_la-selex.lo libsquid_la-sqerror.lo libsquid_la-sqio.lo libsquid_la-squidcore.lo libsquid_la-sre_ctype.lo libsquid_la-sre_random.lo libsquid_la-sre_string.lo libsquid_la-ssi.lo libsquid_la-stockholm.lo libsquid_la-types.lo libsquid_la-vectorops.lo libsquid_la-aligneval.lo libsquid_la-cluster.lo libsquid_la-dayhoff.lo libsquid_la-dirichlet.lo
> libsquid_la-eps.lo libsquid_la-iupac.lo libsquid_la-revcomp.lo libsquid_la-rk.lo libsquid_la-seqencode.lo libsquid_la-shuffle.lo libsquid_la-sre_math.lo libsquid_la-sre_stack.lo libsquid_la-stopwatch.lo libsquid_la-translate.lo libsquid_la-weight.lo libsquid_la-wuss.lo
> libtool: link: gcc -shared -fPIC -DPIC .libs/libsquid_la-a2m.o .libs/libsquid_la-alignio.o .libs/libsquid_la-clustal.o .libs/libsquid_la-file.o .libs/libsquid_la-getopt.o .libs/libsquid_la-gki.o .libs/libsquid_la-hsregex.o .libs/libsquid_la-msa.o .libs/libsquid_la-msf.o .libs/libsquid_la-phylip.o .libs/libsquid_la-selex.o .libs/libsquid_la-sqerror.o .libs/libsquid_la-sqio.o .libs/libsquid_la-squidcore.o .libs/libsquid_la-sre_ctype.o .libs/libsquid_la-sre_random.o .libs/libsquid_la-sre_string.o .libs/libsquid_la-ssi.o .libs/libsquid_la-stockholm.o .libs/libsquid_la-types.o .libs/libsquid_la-vectorops.o .libs/libsquid_la-aligneval.o .libs/libsquid_la-cluster.o .libs/libsquid_la-dayhoff.o .libs/libsquid_la-dirichlet.o .libs/libsquid_la-eps.o .libs/libsquid_la-iupac.o .libs/libsquid_la-revcomp.o
> .libs/libsquid_la-rk.o .libs/libsquid_la-seqencode.o .libs/libsquid_la-shuffle.o .libs/libsquid_la-sre_math.o .libs/libsquid_la-sre_stack.o .libs/libsquid_la-stopwatch.o .libs/libsquid_la-translate.o .libs/libsquid_la-weight.o .libs/libsquid_la-wuss.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsquid.so.1 -o .libs/libsquid.so.1.0.0
> libtool: link: (cd ".libs" && rm -f "libsquid.so.1" && ln -s "libsquid.so.1.0.0" "libsquid.so.1")
> libtool: link: (cd ".libs" && rm -f "libsquid.so" && ln -s "libsquid.so.1.0.0" "libsquid.so")
> libtool: link: /usr/bin/ar cr .libs/libsquid.a libsquid_la-a2m.o libsquid_la-alignio.o libsquid_la-clustal.o libsquid_la-file.o libsquid_la-getopt.o libsquid_la-gki.o libsquid_la-hsregex.o libsquid_la-msa.o libsquid_la-msf.o libsquid_la-phylip.o libsquid_la-selex.o libsquid_la-sqerror.o libsquid_la-sqio.o libsquid_la-squidcore.o libsquid_la-sre_ctype.o libsquid_la-sre_random.o libsquid_la-sre_string.o libsquid_la-ssi.o libsquid_la-stockholm.o libsquid_la-types.o libsquid_la-vectorops.o libsquid_la-aligneval.o libsquid_la-cluster.o libsquid_la-dayhoff.o libsquid_la-dirichlet.o libsquid_la-eps.o libsquid_la-iupac.o libsquid_la-revcomp.o libsquid_la-rk.o libsquid_la-seqencode.o libsquid_la-shuffle.o libsquid_la-sre_math.o libsquid_la-sre_stack.o libsquid_la-stopwatch.o libsquid_la-translate.o
> libsquid_la-weight.o libsquid_la-wuss.o
> libtool: link: ranlib .libs/libsquid.a
> libtool: link: ( cd ".libs" && rm -f "libsquid.la" && ln -s "../libsquid.la" "libsquid.la" )
> /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o afetch afetch_main.o libsquid.la -lm
> /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o libsquid.la -lm
> /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o compalign compalign_main.o aligneval.o libsquid.la -lm
> /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o libsquid.la -lm
> /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o revcomp revcomp_main.o revcomp.o shuffle.o libsquid.la -lm
> /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o seqsplit seqsplit_main.o libsquid.la -lm
> /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o seqstat seqstat_main.o libsquid.la -lm
> /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o sfetch sfetch_main.o revcomp.o shuffle.o libsquid.la -lm
> libtool: link: gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/afetch afetch_main.o ./.libs/libsquid.so -lm
> libtool: link: gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sfetch sfetch_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm
> libtool: link: gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o ./.libs/libsquid.so -lm
> libtool: link: gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/revcomp revcomp_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm
> libtool: link: gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqstat seqstat_main.o ./.libs/libsquid.so -lm
> libtool: link: gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compalign compalign_main.o aligneval.o ./.libs/libsquid.so -lm
> /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o shuffle shuffle_main.o iupac.o shuffle.o libsquid.la -lm
> /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o sindex sindex_main.o libsquid.la -lm
> libtool: link: gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o ./.libs/libsquid.so -lm
> /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o libsquid.la -lm
> /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o libsquid.la -lm
> /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o libsquid.la -lm
> libtool: link: gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqsplit seqsplit_main.o ./.libs/libsquid.so -lm
> libtool: link: gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/shuffle shuffle_main.o iupac.o shuffle.o ./.libs/libsquid.so -lm
> libtool: link: gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sindex sindex_main.o ./.libs/libsquid.so -lm
> libtool: link: gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o ./.libs/libsquid.so -lm
> libtool: link: gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o ./.libs/libsquid.so -lm
> libtool: link: gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o ./.libs/libsquid.so -lm
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1.debhelper.log
> debian/rules override_dh_auto_test
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> chmod u+x Testsuite/x-base-* Testsuite/bug-1-sfetch*
> ln -s .libs/libsquid.a
> ln: failed to create symbolic link './libsquid.a': File exists
> make[1]: *** [debian/rules:66: override_dh_auto_test] Error 1
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> make: *** [debian/rules:12: binary] Error 2
> dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -b' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/16/biosquid_1.9g+cvs20050121-12_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
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