[Debian-med-packaging] Bug#1057809: python-pysam ftbfs with Python 3.12

[Matthias Klose]

Package: src:python-pysam
Version: 0.22.0+ds-1
Severity: serious
Tags: sid trixie
User: debian-python at lists.debian.org
Usertags: python3.12

python-pysam ftbfs with Python 3.12, didn't check for any follow-up errors:

[...]
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 
-Wall -g -fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -g -fwrapv -O2 -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security 
-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 
-I/<<PKGBUILDDIR>>/pysam -I/usr/include -I/<<PKGBUILDDIR>>/samtools 
-I/<<PKGBUILDDIR>>/samtools/lz4 -I/<<PKGBUILDDIR>>/bcftools 
-I/<<PKGBUILDDIR>> -I/usr/include/python3.12 -c pysam/libchtslib.c -o 
build/temp.linux-x86_64-cpython-312/pysam/libchtslib.o -Wno-unused 
-Wno-strict-prototypes -Wno-sign-compare 
-Wno-error=declaration-after-statement
pysam/libchtslib.c: In function ‘__pyx_f_5pysam_10libchtslib_set_verbosity’:
pysam/libchtslib.c:1387:32: error: ‘_PyCFrame’ has no member named 
‘use_tracing’
  1387 |      (unlikely((tstate)->cframe->use_tracing) &&\
       |                                ^~
pysam/libchtslib.c:958:43: note: in definition of macro ‘unlikely’
   958 |   #define unlikely(x) __builtin_expect(!!(x), 0)
       |                                           ^
pysam/libchtslib.c:1426:15: note: in expansion of macro ‘__Pyx_IsTracing’
  1426 |           if (__Pyx_IsTracing(tstate, 1, 1)) {\
       |               ^~~~~~~~~~~~~~~