[Debian-med-packaging] Bug#1058558: seqkit: FTBFS: make: *** [debian/rules:8: binary] Error 25

[Lucas Nussbaum]

Source: seqkit
Version: 2.3.1+ds-1
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20231212 ftbfs-trixie

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
>  debian/rules binary
> dh binary --buildsystem=golang --with=golang --builddirectory=build # --sourcedirectory=seqkit
>    dh_update_autotools_config -O--buildsystem=golang -O--builddirectory=build
>    dh_autoreconf -O--buildsystem=golang -O--builddirectory=build
>    dh_auto_configure -O--buildsystem=golang -O--builddirectory=build
>    dh_auto_build -O--buildsystem=golang -O--builddirectory=build
> 	cd build && go install -trimpath -v -p 8 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd
> src/github.com/shenwei356/seqkit/seqkit/cmd/pair.go:32:2: cannot find package "github.com/pkg/errors" in any of:
> 	/usr/lib/go-1.21/src/github.com/pkg/errors (from $GOROOT)
> 	/<<PKGBUILDDIR>>/build/src/github.com/pkg/errors (from $GOPATH)
> dh_auto_build: error: cd build && go install -trimpath -v -p 8 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd returned exit code 1
> make: *** [debian/rules:8: binary] Error 25


The full build log is available from:
http://qa-logs.debian.net/2023/12/12/seqkit_2.3.1+ds-1_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20231212;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20231212&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.