[Debian-med-packaging] Bug#1028677: libncl: FTBFS: ValueError: invalid mode: 'rU'

[Lucas Nussbaum]

Source: libncl
Version: 2.1.21+git20210811.b1213a7-3
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20230113 ftbfs-bookworm

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> make[4]: Entering directory '/<<PKGBUILDDIR>>/example/ncltest'
> /usr/bin/python3 ../../test/roundTripNCLTest.py ../../example/ncltest/ncltest ../../test/OldValidIn ../../test/OldValidOut
> "/<<PKGBUILDDIR>>/example/ncltest/ncltest" "-s2" "/<<PKGBUILDDIR>>/test/OldValidIn/m.nex"
> [Reading -s2     ]
> [Reading -s2     ]
> storing read block: TAXA
> storing read block: CHARACTERS
> storing read block: ASSUMPTIONS
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/example/ncltest/../../test/roundTripNCLTest.py", line 255, in <module>
>     runTest(inputParentPath,
>   File "/<<PKGBUILDDIR>>/example/ncltest/../../test/roundTripNCLTest.py", line 106, in runTest
>     e = open(expectedOut, "rU")
>         ^^^^^^^^^^^^^^^^^^^^^^^
> ValueError: invalid mode: 'rU'
> make[4]: *** [Makefile:626: check-local] Error 1
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/example/ncltest'
> make[3]: *** [Makefile:502: check-am] Error 2
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/example/ncltest'
> make[2]: *** [Makefile:380: check-recursive] Error 1
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/example'
> make[1]: *** [Makefile:473: check-recursive] Error 1
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_auto_test: error: make -j8 check "TESTSUITEFLAGS=-j8 --verbose" VERBOSE=1 returned exit code 2


The full build log is available from:
http://qa-logs.debian.net/2023/01/13/libncl_2.1.21+git20210811.b1213a7-3_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20230113;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20230113&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.