[Debian-med-packaging] Bug#1028823: python-dicompylercore: FTBFS: AttributeError: module 'numpy' has no attribute 'bool'
Lucas Nussbaum
lucas at debian.org
Sat Jan 14 12:43:10 GMT 2023
Source: python-dicompylercore
Version: 0.5.5-4
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20230113 ftbfs-bookworm
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> debian/rules binary
> dh binary --with python3 --buildsystem=pybuild
> dh_update_autotools_config -O--buildsystem=pybuild
> dh_autoreconf -O--buildsystem=pybuild
> dh_auto_configure -O--buildsystem=pybuild
> I: pybuild base:240: python3.11 setup.py config
> running config
> dh_auto_build -O--buildsystem=pybuild
> I: pybuild base:240: /usr/bin/python3 setup.py build
> running build
> running build_py
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/dicompylercore
> copying dicompylercore/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/dicompylercore
> copying dicompylercore/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/dicompylercore
> copying dicompylercore/dvh.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/dicompylercore
> copying dicompylercore/dicomparser.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/dicompylercore
> copying dicompylercore/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/dicompylercore
> copying dicompylercore/dvhcalc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/dicompylercore
> running egg_info
> creating dicompyler_core.egg-info
> writing dicompyler_core.egg-info/PKG-INFO
> writing dependency_links to dicompyler_core.egg-info/dependency_links.txt
> writing requirements to dicompyler_core.egg-info/requires.txt
> writing top-level names to dicompyler_core.egg-info/top_level.txt
> writing manifest file 'dicompyler_core.egg-info/SOURCES.txt'
> reading manifest file 'dicompyler_core.egg-info/SOURCES.txt'
> reading manifest template 'MANIFEST.in'
> warning: no previously-included files matching '__pycache__' found under directory '*'
> warning: no previously-included files matching '*.py[co]' found under directory '*'
> warning: no previously-included files matching '*.DS_Store' found under directory '*'
> adding license file 'LICENSE'
> adding license file 'AUTHORS.rst'
> writing manifest file 'dicompyler_core.egg-info/SOURCES.txt'
> dh_auto_test -O--buildsystem=pybuild
> I: pybuild base:240: python3.11 setup.py test
> running test
> WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox.
> running egg_info
> writing dicompyler_core.egg-info/PKG-INFO
> writing dependency_links to dicompyler_core.egg-info/dependency_links.txt
> writing requirements to dicompyler_core.egg-info/requires.txt
> writing top-level names to dicompyler_core.egg-info/top_level.txt
> reading manifest file 'dicompyler_core.egg-info/SOURCES.txt'
> reading manifest template 'MANIFEST.in'
> warning: no previously-included files matching '__pycache__' found under directory '*'
> warning: no previously-included files matching '*.py[co]' found under directory '*'
> warning: no previously-included files matching '*.DS_Store' found under directory '*'
> adding license file 'LICENSE'
> adding license file 'AUTHORS.rst'
> writing manifest file 'dicompyler_core.egg-info/SOURCES.txt'
> running build_ext
> generated new fontManager
> test_absolute_relative_dose_dvh (tests.test_dvh.TestDVH.test_absolute_relative_dose_dvh)
> Test if an absolute and relative dose DVH can be generated. ... ok
> test_absolute_relative_full_conversion (tests.test_dvh.TestDVH.test_absolute_relative_full_conversion)
> Test if an abs / relative volume / dose DVH can be generated. ... ok
> test_absolute_relative_volume_dvh (tests.test_dvh.TestDVH.test_absolute_relative_volume_dvh)
> Test if an absolute and relative volume DVH can be generated. ... ok
> test_cumulative_dvh (tests.test_dvh.TestDVH.test_cumulative_dvh)
> Test if a differential DVH can be converted to a cumulative DVH. ... ok
> test_differential_dvh (tests.test_dvh.TestDVH.test_differential_dvh)
> Test if a cumulative DVH can be converted to a differential DVH. ... ok
> test_dose_constraint_with_no_counts (tests.test_dvh.TestDVH.test_dose_constraint_with_no_counts) ... ok
> test_dose_constraint_with_zero_volume (tests.test_dvh.TestDVH.test_dose_constraint_with_zero_volume) ... ok
> test_dvh_compare (tests.test_dvh.TestDVH.test_dvh_compare)
> Test if the DVH comparsion summary can be generated. ... ok
> test_dvh_describe (tests.test_dvh.TestDVH.test_dvh_describe)
> Test if the DVH statistics summary can be generated. ... ok
> test_dvh_properties (tests.test_dvh.TestDVH.test_dvh_properties)
> Test if the DVH properties can be derived. ... ok
> test_dvh_statistics (tests.test_dvh.TestDVH.test_dvh_statistics)
> Test if the DVH statistics can be calculated. ... ok
> test_dvh_statistics_shorthand (tests.test_dvh.TestDVH.test_dvh_statistics_shorthand)
> Test if the DVH statistics can be accessed via shorthand. ... ok
> test_dvh_statistics_shorthand_fail (tests.test_dvh.TestDVH.test_dvh_statistics_shorthand_fail)
> Test if the DVH statistics shorthand fail on invalid syntaxes. ... ok
> test_dvh_statistics_with_no_counts (tests.test_dvh.TestDVH.test_dvh_statistics_with_no_counts) ... ok
> test_dvh_statistics_with_zero_volume (tests.test_dvh.TestDVH.test_dvh_statistics_with_zero_volume) ... ok
> test_dvh_value (tests.test_dvh.TestDVH.test_dvh_value)
> Test if the DVHValue class works as expected. ... ok
> test_plotting (tests.test_dvh.TestDVH.test_plotting)
> Test if the DVH can be plotted. ... ok
> test_raw_data_dvh (tests.test_dvh.TestDVH.test_raw_data_dvh)
> Test if a DVH can be created from raw data. ... ok
> test_raw_data_dvh_max_bins (tests.test_dvh.TestDVH.test_raw_data_dvh_max_bins)
> Test if a DVH can be created from raw data with [0, 5] bin. ... ok
> test_dataset_import (tests.test_dicomparser.TestCommon.test_dataset_import)
> Test if a pydicom dataset file can be parsed. ... ok
> test_demographics (tests.test_dicomparser.TestCommon.test_demographics)
> Test if the demographics info can be parsed. ... ok
> test_file_import (tests.test_dicomparser.TestCommon.test_file_import)
> Test if a standard DICOM file can be parsed. ... ok
> test_frame_of_reference (tests.test_dicomparser.TestCommon.test_frame_of_reference)
> Test if the frame of reference can be parsed. ... ok
> test_series_info (tests.test_dicomparser.TestCommon.test_series_info)
> Test if the series info can be parsed. ... ok
> test_study_info (tests.test_dicomparser.TestCommon.test_study_info)
> Test if the study info can be parsed. ... ok
> test_image_data (tests.test_dicomparser.TestImage.test_image_data)
> Test if the image data info can be parsed. ... ok
> test_image_generation (tests.test_dicomparser.TestImage.test_image_generation)
> Test if the image can be generated. ... ok
> test_image_location (tests.test_dicomparser.TestImage.test_image_location)
> Test if the image location can be parsed. ... ok
> test_image_orientation (tests.test_dicomparser.TestImage.test_image_orientation)
> Test if the image orientation can be parsed. ... ok
> test_patient_to_pixel_lut (tests.test_dicomparser.TestImage.test_patient_to_pixel_lut)
> Test if the image transformation matrix (LUT) can be generated. ... /<<PKGBUILDDIR>>/dicompylercore/dicomparser.py:440: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray.
> m = np.matrix(
> /<<PKGBUILDDIR>>/dicompylercore/dicomparser.py:449: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray.
> imat = m * np.matrix([[i], [0], [0], [1]])
> /usr/lib/python3/dist-packages/numpy/matrixlib/defmatrix.py:69: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray.
> return matrix(data, dtype=dtype, copy=False)
> /<<PKGBUILDDIR>>/dicompylercore/dicomparser.py:452: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray.
> jmat = m * np.matrix([[0], [j], [0], [1]])
> ok
> test_dose_data (tests.test_dicomparser.TestRTDose.test_dose_data)
> Test if the dose data can be parsed. ... ok
> test_dose_grid (tests.test_dicomparser.TestRTDose.test_dose_grid)
> Test if the dose grid can be parsed. ... ok
> test_dvh_data (tests.test_dicomparser.TestRTDose.test_dvh_data)
> Test if the DVH data can be parsed. ... ok
> test_has_dvhs (tests.test_dicomparser.TestRTDose.test_has_dvhs)
> Test if DVHs exist in the dataset. ... ok
> test_isodose_points (tests.test_dicomparser.TestRTDose.test_isodose_points)
> Test if isodose points can be generated from the dose grid. ... ok
> test_referenced_plan (tests.test_dicomparser.TestRTDose.test_referenced_plan)
> Test if the referenced plan can be parsed. ... ok
> test_plan_beams_in_fraction (tests.test_dicomparser.TestRTPlan.test_plan_beams_in_fraction)
> Test if beams for a given fraction data can be parsed. ... ok
> test_plan_data (tests.test_dicomparser.TestRTPlan.test_plan_data)
> Test if the plan data can be parsed. ... ok
> test_referenced_structureset (tests.test_dicomparser.TestRTPlan.test_referenced_structureset)
> Test if the referenced structure set can be parsed. ... ok
> test_referenced_frame_of_reference (tests.test_dicomparser.TestRTStructureSet.test_referenced_frame_of_reference)
> Test if the referenced frame of reference can be parsed. ... ok
> test_referenced_series (tests.test_dicomparser.TestRTStructureSet.test_referenced_series)
> Test if the referenced series can be parsed. ... ok
> test_structure_plane_thickness (tests.test_dicomparser.TestRTStructureSet.test_structure_plane_thickness)
> Test if a structure plane thickness can be parsed. ... ok
> test_structure_set_coordinates (tests.test_dicomparser.TestRTStructureSet.test_structure_set_coordinates)
> Test if the structure set coordinates can be parsed. ... ok
> test_structure_set_data (tests.test_dicomparser.TestRTStructureSet.test_structure_set_data)
> Test if the structure set data can be parsed. ... ok
> test_structure_set_info (tests.test_dicomparser.TestRTStructureSet.test_structure_set_info)
> Test if the structure set info can be parsed. ... ok
> test_structure_volume (tests.test_dicomparser.TestRTStructureSet.test_structure_volume)
> Test if a structure volume can be calculated. ... ok
> test_structure_volume_holes (tests.test_dicomparser.TestRTStructureSet.test_structure_volume_holes)
> Test if a structure volume with holes can be calculated. ... /<<PKGBUILDDIR>>/dicompylercore/dicomparser.py:610: ShapelyDeprecationWarning: Setting custom attributes on geometry objects is deprecated, and will raise an AttributeError in Shapely 2.0
> self.o = o
> ok
> test_dvh_calculation (tests.test_dvhcalc.TestDVHCalc.test_dvh_calculation)
> Test if cumulative DVHs can be calculated from the DICOM data. ... /<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py:240: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. (This may have returned Python scalars in past versions.
> grid = np.logical_xor(m.astype(np.uint8), grid).astype(np.bool)
> ERROR
> test_dvh_calculation_empty_structure_no_dose (tests.test_dvhcalc.TestDVHCalc.test_dvh_calculation_empty_structure_no_dose)
> Test if a DVH returns an empty histogram for invalid data. ... ok
> test_dvh_calculation_with_dose_limit (tests.test_dvhcalc.TestDVHCalc.test_dvh_calculation_with_dose_limit)
> Test if a DVH can be calculated with a max dose limit. ... ERROR
> test_dvh_calculation_with_interpolation_between_planes (tests.test_dvhcalc.TestDVHCalc.test_dvh_calculation_with_interpolation_between_planes)
> Test if DVH can be calculated using interpolation between planes. ... ERROR
> test_dvh_contour_outside_dose_grid (tests.test_dvhcalc.TestDVHCalc.test_dvh_contour_outside_dose_grid)
> Test if a DVH can be calculated with contours outside a dosegrid. ... ERROR
> test_dvh_with_in_plane_interpolation (tests.test_dvhcalc.TestDVHCalc.test_dvh_with_in_plane_interpolation)
> Test if DVH can be calculated using in plane interpolation. ... ERROR
> test_dvh_with_in_plane_interpolation_sampling_fail (tests.test_dvhcalc.TestDVHCalc.test_dvh_with_in_plane_interpolation_sampling_fail)
> Test if DVH calculation fails when the sampling rate is invalid. ... ok
> test_dvh_with_structure_extents (tests.test_dvhcalc.TestDVHCalc.test_dvh_with_structure_extents)
> Test if DVH calculation is same as normal with structure extents. ... ERROR
> test_dvh_with_structure_extents_larger_than_dose_grid (tests.test_dvhcalc.TestDVHCalc.test_dvh_with_structure_extents_larger_than_dose_grid)
> Test DVH calculation using large structure structure extents. ... ERROR
>
> ======================================================================
> ERROR: test_dvh_calculation (tests.test_dvhcalc.TestDVHCalc.test_dvh_calculation)
> Test if cumulative DVHs can be calculated from the DICOM data.
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/<<PKGBUILDDIR>>/tests/test_dvhcalc.py", line 86, in test_dvh_calculation
> dvh = self.calc_dvh(5)
> ^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/tests/test_dvhcalc.py", line 45, in calc_dvh
> dvh = dvhcalc.get_dvh(
> ^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 72, in get_dvh
> calcdvh = calculate_dvh(s, rtdose, limit, calculate_full_volume,
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 187, in calculate_dvh
> planedata[z] = calculate_plane_histogram(plane, doseplane,
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 240, in calculate_plane_histogram
> grid = np.logical_xor(m.astype(np.uint8), grid).astype(np.bool)
> ^^^^^^^
> File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 284, in __getattr__
> raise AttributeError("module {!r} has no attribute "
> AttributeError: module 'numpy' has no attribute 'bool'
>
> ======================================================================
> ERROR: test_dvh_calculation_with_dose_limit (tests.test_dvhcalc.TestDVHCalc.test_dvh_calculation_with_dose_limit)
> Test if a DVH can be calculated with a max dose limit.
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/<<PKGBUILDDIR>>/tests/test_dvhcalc.py", line 104, in test_dvh_calculation_with_dose_limit
> limitdvh = self.calc_dvh(5, limit=500)
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/tests/test_dvhcalc.py", line 45, in calc_dvh
> dvh = dvhcalc.get_dvh(
> ^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 72, in get_dvh
> calcdvh = calculate_dvh(s, rtdose, limit, calculate_full_volume,
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 187, in calculate_dvh
> planedata[z] = calculate_plane_histogram(plane, doseplane,
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 240, in calculate_plane_histogram
> grid = np.logical_xor(m.astype(np.uint8), grid).astype(np.bool)
> ^^^^^^^
> File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 284, in __getattr__
> raise AttributeError("module {!r} has no attribute "
> AttributeError: module 'numpy' has no attribute 'bool'
>
> ======================================================================
> ERROR: test_dvh_calculation_with_interpolation_between_planes (tests.test_dvhcalc.TestDVHCalc.test_dvh_calculation_with_interpolation_between_planes)
> Test if DVH can be calculated using interpolation between planes.
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/<<PKGBUILDDIR>>/tests/test_dvhcalc.py", line 184, in test_dvh_calculation_with_interpolation_between_planes
> dvh = self.calc_dvh(8, interpolation_segments=2)
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/tests/test_dvhcalc.py", line 45, in calc_dvh
> dvh = dvhcalc.get_dvh(
> ^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 72, in get_dvh
> calcdvh = calculate_dvh(s, rtdose, limit, calculate_full_volume,
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 187, in calculate_dvh
> planedata[z] = calculate_plane_histogram(plane, doseplane,
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 240, in calculate_plane_histogram
> grid = np.logical_xor(m.astype(np.uint8), grid).astype(np.bool)
> ^^^^^^^
> File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 284, in __getattr__
> raise AttributeError("module {!r} has no attribute "
> AttributeError: module 'numpy' has no attribute 'bool'
>
> ======================================================================
> ERROR: test_dvh_contour_outside_dose_grid (tests.test_dvhcalc.TestDVHCalc.test_dvh_contour_outside_dose_grid)
> Test if a DVH can be calculated with contours outside a dosegrid.
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/<<PKGBUILDDIR>>/tests/test_dvhcalc.py", line 135, in test_dvh_contour_outside_dose_grid
> include_vol_dvh = self.calc_dvh(8, calculate_full_volume=True)
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/tests/test_dvhcalc.py", line 45, in calc_dvh
> dvh = dvhcalc.get_dvh(
> ^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 72, in get_dvh
> calcdvh = calculate_dvh(s, rtdose, limit, calculate_full_volume,
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 187, in calculate_dvh
> planedata[z] = calculate_plane_histogram(plane, doseplane,
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 240, in calculate_plane_histogram
> grid = np.logical_xor(m.astype(np.uint8), grid).astype(np.bool)
> ^^^^^^^
> File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 284, in __getattr__
> raise AttributeError("module {!r} has no attribute "
> AttributeError: module 'numpy' has no attribute 'bool'
>
> ======================================================================
> ERROR: test_dvh_with_in_plane_interpolation (tests.test_dvhcalc.TestDVHCalc.test_dvh_with_in_plane_interpolation)
> Test if DVH can be calculated using in plane interpolation.
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/<<PKGBUILDDIR>>/tests/test_dvhcalc.py", line 144, in test_dvh_with_in_plane_interpolation
> interp_dvh = self.calc_dvh(
> ^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/tests/test_dvhcalc.py", line 45, in calc_dvh
> dvh = dvhcalc.get_dvh(
> ^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 72, in get_dvh
> calcdvh = calculate_dvh(s, rtdose, limit, calculate_full_volume,
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 142, in calculate_dvh
> dd['lut'] = get_resampled_lut(
> ^^^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 419, in get_resampled_lut
> x = np.linspace(extents[0], extents[2], int(xsamples), dtype=np.float)
> ^^^^^^^^
> File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 284, in __getattr__
> raise AttributeError("module {!r} has no attribute "
> AttributeError: module 'numpy' has no attribute 'float'
>
> ======================================================================
> ERROR: test_dvh_with_structure_extents (tests.test_dvhcalc.TestDVHCalc.test_dvh_with_structure_extents)
> Test if DVH calculation is same as normal with structure extents.
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/<<PKGBUILDDIR>>/tests/test_dvhcalc.py", line 163, in test_dvh_with_structure_extents
> orig_dvh = self.calc_dvh(8)
> ^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/tests/test_dvhcalc.py", line 45, in calc_dvh
> dvh = dvhcalc.get_dvh(
> ^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 72, in get_dvh
> calcdvh = calculate_dvh(s, rtdose, limit, calculate_full_volume,
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 187, in calculate_dvh
> planedata[z] = calculate_plane_histogram(plane, doseplane,
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 240, in calculate_plane_histogram
> grid = np.logical_xor(m.astype(np.uint8), grid).astype(np.bool)
> ^^^^^^^
> File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 284, in __getattr__
> raise AttributeError("module {!r} has no attribute "
> AttributeError: module 'numpy' has no attribute 'bool'
>
> ======================================================================
> ERROR: test_dvh_with_structure_extents_larger_than_dose_grid (tests.test_dvhcalc.TestDVHCalc.test_dvh_with_structure_extents_larger_than_dose_grid)
> Test DVH calculation using large structure structure extents.
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/<<PKGBUILDDIR>>/tests/test_dvhcalc.py", line 172, in test_dvh_with_structure_extents_larger_than_dose_grid
> structure_extents_dvh = self.calc_dvh(3, use_structure_extents=True)
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/tests/test_dvhcalc.py", line 45, in calc_dvh
> dvh = dvhcalc.get_dvh(
> ^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 72, in get_dvh
> calcdvh = calculate_dvh(s, rtdose, limit, calculate_full_volume,
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 187, in calculate_dvh
> planedata[z] = calculate_plane_histogram(plane, doseplane,
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> File "/<<PKGBUILDDIR>>/dicompylercore/dvhcalc.py", line 240, in calculate_plane_histogram
> grid = np.logical_xor(m.astype(np.uint8), grid).astype(np.bool)
> ^^^^^^^
> File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 284, in __getattr__
> raise AttributeError("module {!r} has no attribute "
> AttributeError: module 'numpy' has no attribute 'bool'
>
> ----------------------------------------------------------------------
> Ran 56 tests in 1.456s
>
> FAILED (errors=7)
> Test failed: <unittest.runner.TextTestResult run=56 errors=7 failures=0>
> Structure: test test Rel Diff Abs diff
> -----
> DVH Type: cumulative, abs dose: Gy, abs volume: cm3
> Volume: 12.81 cm3 12.81 cm3 +0.00 % +0.00
> Max: 14.58 Gy 14.58 Gy +0.00 % +0.00
> Min: 14.07 Gy 14.07 Gy +0.00 % +0.00
> Mean: 14.29 Gy 14.29 Gy +0.00 % +0.00
> D100: 14.06 Gy 14.06 Gy +0.00 % +0.00
> D98: 14.12 Gy 14.12 Gy +0.00 % +0.00
> D95: 14.14 Gy 14.14 Gy +0.00 % +0.00
> D2cc: 14.39 Gy 14.39 Gy +0.00 % +0.00
> Structure: test test Rel Diff Abs diff
> -----
> DVH Type: cumulative, rel dose, abs volume: cm3
> Volume: 12.81 cm3 12.81 cm3 +0.00 % +0.00
> Max: 104.14 % 104.14 % +0.00 % +0.00
> Min: 100.50 % 100.50 % +0.00 % +0.00
> Mean: 102.04 % 102.04 % +0.00 % +0.00
> D100: 100.43 % 100.43 % +0.00 % +0.00
> D98: 100.86 % 100.86 % +0.00 % +0.00
> D95: 101.00 % 101.00 % +0.00 % +0.00
> V100: 12.81 % 12.81 % +0.00 % +0.00
> V95: 12.81 % 12.81 % +0.00 % +0.00
> V5: 12.81 % 12.81 % +0.00 % +0.00
> D2cc: 102.79 % 102.79 % +0.00 % +0.00
> Structure: test
> -----
> DVH Type: cumulative, abs dose: Gy, abs volume: cm3
> Volume: 12.81 cm3
> Max Dose: 14.58 Gy
> Min Dose: 14.07 Gy
> Mean Dose: 14.29 Gy
> D100: 14.06 Gy
> D98: 14.12 Gy
> D95: 14.14 Gy
> D2cc: 14.39 Gy
> Structure: test
> -----
> DVH Type: cumulative, rel dose, abs volume: cm3
> Volume: 12.81 cm3
> Max Dose: 104.14 %
> Min Dose: 100.50 %
> Mean Dose: 102.04 %
> D100: 100.43 %
> D98: 100.86 %
> D95: 101.00 %
> V100: 12.81 cm3
> V95: 12.81 cm3
> V5: 12.81 cm3
> D2cc: 102.79 %
> error: Test failed: <unittest.runner.TextTestResult run=56 errors=7 failures=0>
> E: pybuild pybuild:388: test: plugin distutils failed with: exit code=1: python3.11 setup.py test
> dh_auto_test: error: pybuild --test -i python{version} -p 3.11 returned exit code 13
The full build log is available from:
http://qa-logs.debian.net/2023/01/13/python-dicompylercore_0.5.5-4_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20230113;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20230113&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
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