[Debian-med-packaging] Bug#1029660: nipype FTBFS: ModuleNotFoundError: No module named 'nibabel.trackvis'

Nilesh Patra nilesh at debian.org
Thu Jan 26 03:21:54 GMT 2023


Package: nipype
Version: 1.7.1-2
Severity: serious

Dear Maintainer,

nipype is incompatible with nibabel 4.0 and FTBFS with several errors of
type:

| _____ ERROR collecting interfaces/mrtrix/tests/test_auto_Tensor2Vector.py ______
| ImportError while importing test module '/<<PKGBUILDDIR>>/nipype/interfaces/mrtrix/tests/test_auto_Tensor2Vector.py'.
| Hint: make sure your test modules/packages have valid Python names.
| Traceback:
| /usr/lib/python3.11/importlib/__init__.py:126: in import_module
|    return _bootstrap._gcd_import(name[level:], package, level)
| ../nipype/interfaces/mrtrix/__init__.py:36: in <module>
|    from .convert import MRTrix2TrackVis
| ../nipype/interfaces/mrtrix/convert.py:6: in <module>
|    import nibabel.trackvis as trk
| E   ModuleNotFoundError: No module named 'nibabel.trackvis'

It has also been out of testing for quite sometime.

-- System Information:
Debian Release: bookworm/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)

Kernel: Linux 6.1.0-1-amd64 (SMP w/8 CPU threads; PREEMPT)
Kernel taint flags: TAINT_WARN
Locale: LANG=en_IN, LC_CTYPE=en_IN (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled



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