[Debian-med-packaging] Bug#1029700: q2-quality-control: tests fail with scipy 1.10

[Drew Parsons]

Package: q2-quality-control
Version: 2022.11.1-2
Severity: normal

scipy 1.10 is now available in experimental.
q2-quality-control fails debci tests using it.

We are considering uploading scipy 1.10 to unstable in order to
included it in the forthcoming stable release.  If we proceed with
that, then this bug will become Severity: serious.

The errors are ImportError: cannot import name 'PearsonRConstantInputWarning'
A sample from the failing test log is

___________ ERROR collecting q2_quality_control/tests/test_filter.py ___________
ImportError while importing test module '/tmp/autopkgtest-lxc.z7g2c7_o/downtmp/autopkgtest_tmp/q2_quality_control/tests/test_filter.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.11/importlib/__init__.py:126: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
q2_quality_control/tests/test_filter.py:13: in <module>
    from q2_types.per_sample_sequences import (
/usr/lib/python3/dist-packages/q2_types/__init__.py:18: in <module>
    importlib.import_module('q2_types.multiplexed_sequences')
/usr/lib/python3.11/importlib/__init__.py:126: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
/usr/lib/python3/dist-packages/q2_types/multiplexed_sequences/__init__.py:11: in <module>
    from ._format import (MultiplexedSingleEndBarcodeInSequenceDirFmt,
/usr/lib/python3/dist-packages/q2_types/multiplexed_sequences/_format.py:11: in <module>
    from ..per_sample_sequences import FastqGzFormat
/usr/lib/python3/dist-packages/q2_types/per_sample_sequences/__init__.py:11: in <module>
    from ._format import (CasavaOneEightSingleLanePerSampleDirFmt,
/usr/lib/python3/dist-packages/q2_types/per_sample_sequences/_format.py:16: in <module>
    import skbio
/usr/lib/python3/dist-packages/skbio/__init__.py:11: in <module>
    import skbio.io  # noqa
/usr/lib/python3/dist-packages/skbio/io/__init__.py:248: in <module>
    import_module('skbio.io.format.lsmat')
/usr/lib/python3.11/importlib/__init__.py:126: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
/usr/lib/python3/dist-packages/skbio/io/format/lsmat.py:77: in <module>
    from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix
/usr/lib/python3/dist-packages/skbio/stats/distance/__init__.py:197: in <module>
    from ._mantel import mantel, pwmantel
/usr/lib/python3/dist-packages/skbio/stats/distance/_mantel.py:16: in <module>
    from scipy.stats import PearsonRConstantInputWarning
E   ImportError: cannot import name 'PearsonRConstantInputWarning' from 'scipy.stats' (/usr/lib/python3/dist-packages/scipy/stats/__init__.py)