[Debian-med-packaging] Bug#1030138: nipy: FTBFS in unstable
Graham Inggs
ginggs at debian.org
Tue Jan 31 14:36:52 GMT 2023
Source: nipy
Version: 0.5.0-6
Severity: serious
Tags: ftbfs
Hi Maintainer
While rebuilding nipy for the removal of Python 3.10, it FTBFS [1].
I've copied what I hope is the relevant part of the log below.
Regards
Graham
[1] https://buildd.debian.org/status/package.php?p=nipy
======================================================================
ERROR: Failure: ModuleNotFoundError (No module named 'nibabel.py3k')
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/nose/failure.py", line 39, in runTest
raise self.exc_val.with_traceback(self.tb)
File "/usr/lib/python3/dist-packages/nose/loader.py", line 416, in
loadTestsFromName
module = self.importer.importFromPath(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/nose/importer.py", line 47, in
importFromPath
return self.importFromDir(dir_path, fqname)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/nose/importer.py", line 94, in
importFromDir
mod = load_module(part_fqname, fh, filename, desc)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/imp.py", line 235, in load_module
return load_source(name, filename, file)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/imp.py", line 172, in load_source
module = _load(spec)
^^^^^^^^^^^
File "<frozen importlib._bootstrap>", line 721, in _load
File "<frozen importlib._bootstrap>", line 690, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 940, in exec_module
File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_nipy/build/nipy/algorithms/statistics/formula/tests/test_formula.py",
line 21, in <module>
from nibabel.py3k import asbytes
ModuleNotFoundError: No module named 'nibabel.py3k'
======================================================================
ERROR: nipy.core.image.tests.test_image_spaces.test_image_xyz_affine
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_nipy/build/nipy/core/image/tests/test_image_spaces.py",
line 37, in test_image_xyz_affine
nimg = nib.Nifti1Image(arr, aff)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/nibabel/nifti1.py", line 1838,
in __init__
alert_future_error(
File "/usr/lib/python3/dist-packages/nibabel/deprecated.py", line
118, in alert_future_error
raise error_class(f'{msg} {error_rec}'.strip())
ValueError: Image data has type int64, which may cause
incompatibilities with other tools. To use this type, pass an explicit
header or dtype argument to Nifti1Image().
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