[Debian-med-packaging] Bug#1041127: pbcopper FTBFS with gcc 13

Adrian Bunk bunk at debian.org
Sat Jul 15 00:26:14 BST 2023


Source: pbcopper
Version: 2.0.0+dfsg-2
Severity: serious
Tags: ftbfs trixie sid experimental

https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/pbcopper.html

...
In file included from ../src/align/LocalAlignment.cpp:5:
../include/pbcopper/align/LocalAlignment.h:20:40: error: ‘uint16_t’ has not been declared
   20 |                    int32_t mismatches, uint16_t score, std::vector<uint32_t> cigar,
      |                                        ^~~~~~~~
../include/pbcopper/align/LocalAlignment.h:20:68: error: ‘uint32_t’ was not declared in this scope
   20 |                    int32_t mismatches, uint16_t score, std::vector<uint32_t> cigar,
      |                                                                    ^~~~~~~~
../include/pbcopper/align/LocalAlignment.h:12:1: note: ‘uint32_t’ is defined in header ‘<cstdint>’; did you forget to ‘#include <cstdint>’?
   11 | #include <vector>
  +++ |+#include <cstdint>
   12 | 
...


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