[Debian-med-packaging] Bug#1041371: seqan3 autopkg test fails

[Matthias Klose]

Package: src:seqan3
Version: 3.2.0+ds-7
Severity: serious
Tags: sid trixie

this blocks the otherwise unrelated migration of gcc-defaults.

see https://ci.debian.net/data/autopkgtest/testing/amd64/s/seqan3/35917949/log.gz

[...]
  35s + export CXX=g++
  35s + export CC=gcc
  35s + dpkg-buildflags --get CFLAGS
  35s + dpkg-buildflags --get CPPFLAGS
  35s + export CFLAGS=-g -O2 
-ffile-prefix-map=/tmp/autopkgtest-lxc.li5aisvz/downtmp/autopkgtest_tmp/build_unit=. 
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 
-D_FORTIFY_SOURCE=2 -O3 -fuse-ld=gold
  35s + dpkg-buildflags --get CXXFLAGS
  35s + dpkg-buildflags --get CPPFLAGS
  35s + export CXXFLAGS=-g -O2 
-ffile-prefix-map=/tmp/autopkgtest-lxc.li5aisvz/downtmp/autopkgtest_tmp/build_unit=. 
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 
-D_FORTIFY_SOURCE=2 -DNDEBUG -O3 -fuse-ld=gold
  35s + dpkg-buildflags --get LDFLAGS
  35s + export LDFLAGS=-Wl,-z,relro -Wl,-z,now
  35s + CMAKE_PREFIX_PATH=/usr/share/cmake cmake ../unit 
-DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None 
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON
  35s -- The CXX compiler identification is GNU 13.1.0
  35s -- Detecting CXX compiler ABI info
  35s -- Detecting CXX compiler ABI info - done
  35s -- Check for working CXX compiler: /usr/bin/g++ - skipped
  35s -- Detecting CXX compile features
  35s -- Detecting CXX compile features - done
  35s -- Finding SeqAn3 and checking requirements:
  35s --   SeqAn3 include dir found:   /usr/include
  35s --     …adding submodule include: 
/usr/include/seqan3/submodules/sdsl-lite/include
  35s --   C++ Standard-20 support:    via -std=c++20
  35s --   C++ Concepts support:       via -std=c++20
  36s --   Thread support:             builtin.
  36s CMake Error at /usr/share/cmake/seqan3/seqan3-config.cmake:113 (message):
  36s   The SDSL library is required, but wasn't found.  Get it from
  36s   https://github.com/xxsds/sdsl-lite
  36s Call Stack (most recent call first):
  36s   /usr/share/cmake/seqan3/seqan3-config.cmake:319 (seqan3_config_error)
  36s 
/tmp/autopkgtest-lxc.li5aisvz/downtmp/autopkgtest_tmp/seqan3-test.cmake:15 
(find_package)
  36s   CMakeLists.txt:11 (include)
  36s
  36s
  36s -- Configuring incomplete, errors occurred!