[Debian-med-packaging] Bug#1042133: nipype: FTBFS: make[1]: *** [debian/rules:39: override_dh_auto_test] Error 2

Lucas Nussbaum lucas at debian.org
Wed Jul 26 20:51:14 BST 2023 

Source: nipype
Version: 1.8.5-3
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20230726 ftbfs-trixie

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> =========================== short test summary info ============================
> ERROR ../nipype/algorithms/metrics.py - nibabel.deprecator.ExpiredDeprecation...
> ERROR ../nipype/algorithms/misc.py - nibabel.deprecator.ExpiredDeprecationErr...
> ERROR ../nipype/algorithms/tests/test_ErrorMap.py - nibabel.deprecator.Expire...
> ERROR ../nipype/algorithms/tests/test_ErrorMap.py - nibabel.deprecator.Expire...
> ERROR ../nipype/algorithms/tests/test_TSNR.py - nibabel.deprecator.ExpiredDep...
> ERROR ../nipype/algorithms/tests/test_TSNR.py - nibabel.deprecator.ExpiredDep...
> ERROR ../nipype/algorithms/tests/test_auto_AddCSVColumn.py - nibabel.deprecat...
> ERROR ../nipype/algorithms/tests/test_auto_AddCSVColumn.py - nibabel.deprecat...
> ERROR ../nipype/algorithms/tests/test_auto_AddCSVRow.py - nibabel.deprecator....
> ERROR ../nipype/algorithms/tests/test_auto_AddCSVRow.py - nibabel.deprecator....
> ERROR ../nipype/algorithms/tests/test_auto_AddNoise.py - nibabel.deprecator.E...
> ERROR ../nipype/algorithms/tests/test_auto_AddNoise.py - nibabel.deprecator.E...
> ERROR ../nipype/algorithms/tests/test_auto_CalculateMedian.py - nibabel.depre...
> ERROR ../nipype/algorithms/tests/test_auto_CalculateMedian.py - nibabel.depre...
> ERROR ../nipype/algorithms/tests/test_auto_CalculateNormalizedMoments.py - ni...
> ERROR ../nipype/algorithms/tests/test_auto_CalculateNormalizedMoments.py - ni...
> ERROR ../nipype/algorithms/tests/test_auto_CreateNifti.py - nibabel.deprecato...
> ERROR ../nipype/algorithms/tests/test_auto_CreateNifti.py - nibabel.deprecato...
> ERROR ../nipype/algorithms/tests/test_auto_Distance.py - nibabel.deprecator.E...
> ERROR ../nipype/algorithms/tests/test_auto_Distance.py - nibabel.deprecator.E...
> ERROR ../nipype/algorithms/tests/test_auto_FuzzyOverlap.py - nibabel.deprecat...
> ERROR ../nipype/algorithms/tests/test_auto_FuzzyOverlap.py - nibabel.deprecat...
> ERROR ../nipype/algorithms/tests/test_auto_Gunzip.py - nibabel.deprecator.Exp...
> ERROR ../nipype/algorithms/tests/test_auto_Gunzip.py - nibabel.deprecator.Exp...
> ERROR ../nipype/algorithms/tests/test_auto_Gzip.py - nibabel.deprecator.Expir...
> ERROR ../nipype/algorithms/tests/test_auto_Gzip.py - nibabel.deprecator.Expir...
> ERROR ../nipype/algorithms/tests/test_auto_Matlab2CSV.py - nibabel.deprecator...
> ERROR ../nipype/algorithms/tests/test_auto_Matlab2CSV.py - nibabel.deprecator...
> ERROR ../nipype/algorithms/tests/test_auto_MergeCSVFiles.py - nibabel.depreca...
> ERROR ../nipype/algorithms/tests/test_auto_MergeCSVFiles.py - nibabel.depreca...
> ERROR ../nipype/algorithms/tests/test_auto_MergeROIs.py - nibabel.deprecator....
> ERROR ../nipype/algorithms/tests/test_auto_MergeROIs.py - nibabel.deprecator....
> ERROR ../nipype/algorithms/tests/test_auto_ModifyAffine.py - nibabel.deprecat...
> ERROR ../nipype/algorithms/tests/test_auto_ModifyAffine.py - nibabel.deprecat...
> ERROR ../nipype/algorithms/tests/test_auto_NormalizeProbabilityMapSet.py - ni...
> ERROR ../nipype/algorithms/tests/test_auto_NormalizeProbabilityMapSet.py - ni...
> ERROR ../nipype/algorithms/tests/test_auto_PickAtlas.py - nibabel.deprecator....
> ERROR ../nipype/algorithms/tests/test_auto_PickAtlas.py - nibabel.deprecator....
> ERROR ../nipype/algorithms/tests/test_auto_Similarity.py - nibabel.deprecator...
> ERROR ../nipype/algorithms/tests/test_auto_Similarity.py - nibabel.deprecator...
> ERROR ../nipype/algorithms/tests/test_auto_SimpleThreshold.py - nibabel.depre...
> ERROR ../nipype/algorithms/tests/test_auto_SimpleThreshold.py - nibabel.depre...
> ERROR ../nipype/algorithms/tests/test_auto_SplitROIs.py - nibabel.deprecator....
> ERROR ../nipype/algorithms/tests/test_auto_SplitROIs.py - nibabel.deprecator....
> ERROR ../nipype/algorithms/tests/test_metrics.py - nibabel.deprecator.Expired...
> ERROR ../nipype/algorithms/tests/test_metrics.py - nibabel.deprecator.Expired...
> ERROR ../nipype/algorithms/tests/test_misc.py - nibabel.deprecator.ExpiredDep...
> ERROR ../nipype/algorithms/tests/test_misc.py - nibabel.deprecator.ExpiredDep...
> ERROR ../nipype/algorithms/tests/test_moments.py - nibabel.deprecator.Expired...
> ERROR ../nipype/algorithms/tests/test_moments.py - nibabel.deprecator.Expired...
> ERROR ../nipype/algorithms/tests/test_normalize_tpms.py - nibabel.deprecator....
> ERROR ../nipype/algorithms/tests/test_normalize_tpms.py - nibabel.deprecator....
> ERROR ../nipype/interfaces/nipy/__init__.py - nibabel.deprecator.ExpiredDepre...
> ERROR ../nipype/interfaces/nipy/base.py - nibabel.deprecator.ExpiredDeprecati...
> ERROR ../nipype/interfaces/nipy/model.py - nibabel.deprecator.ExpiredDeprecat...
> ERROR ../nipype/interfaces/nipy/preprocess.py - nibabel.deprecator.ExpiredDep...
> ERROR ../nipype/interfaces/nipy/utils.py - nibabel.deprecator.ExpiredDeprecat...
> ERROR ../nipype/interfaces/nipy/tests/__init__.py - nibabel.deprecator.Expire...
> ERROR ../nipype/interfaces/nipy/tests/test_auto_ComputeMask.py - nibabel.depr...
> ERROR ../nipype/interfaces/nipy/tests/test_auto_ComputeMask.py - nibabel.depr...
> ERROR ../nipype/interfaces/nipy/tests/test_auto_EstimateContrast.py - nibabel...
> ERROR ../nipype/interfaces/nipy/tests/test_auto_EstimateContrast.py - nibabel...
> ERROR ../nipype/interfaces/nipy/tests/test_auto_FitGLM.py - nibabel.deprecato...
> ERROR ../nipype/interfaces/nipy/tests/test_auto_FitGLM.py - nibabel.deprecato...
> ERROR ../nipype/interfaces/nipy/tests/test_auto_NipyBaseInterface.py - nibabe...
> ERROR ../nipype/interfaces/nipy/tests/test_auto_NipyBaseInterface.py - nibabe...
> ERROR ../nipype/interfaces/nipy/tests/test_auto_Similarity.py - nibabel.depre...
> ERROR ../nipype/interfaces/nipy/tests/test_auto_Similarity.py - nibabel.depre...
> ERROR ../nipype/interfaces/nipy/tests/test_auto_SpaceTimeRealigner.py - nibab...
> ERROR ../nipype/interfaces/nipy/tests/test_auto_SpaceTimeRealigner.py - nibab...
> ERROR ../nipype/interfaces/nipy/tests/test_auto_Trim.py - nibabel.deprecator....
> ERROR ../nipype/interfaces/nipy/tests/test_auto_Trim.py - nibabel.deprecator....
> !!!!!!!!!!!!!!!!!!! Interrupted: 72 errors during collection !!!!!!!!!!!!!!!!!!!
> ================ 1 deselected, 20 warnings, 72 errors in 19.85s ================
> make[1]: *** [debian/rules:39: override_dh_auto_test] Error 2


The full build log is available from:
http://qa-logs.debian.net/2023/07/26/nipype_1.8.5-3_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20230726;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20230726&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.

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