[Debian-med-packaging] Bug#1042608: brian: FTBFS with Sphinx 7.1, docutils 0.20: rm: cannot remove 'docs/_static/jquery.js': No such file or directory

[Lucas Nussbaum]

Source: brian
Version: 2.5.4-1
Severity: important
Tags: ftbfs
User: python-modules-team at lists.alioth.debian.org
Usertags: sphinx7.1

Hi,

brian fails to build with Sphinx 7.1 and docutils 0.20, both of which
are currently available in experimental.

Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_install
> I: pybuild plugin_pyproject:161: Copying package built for python3.11 to destdir
> echo "backend : Agg" >| /<<PKGBUILDDIR>>/build/matplotlibrc
> : # Only now lets build docs
> mkdir -p docs_sphinx/_static # to avoid crashes with older sphinx (e.g. on jaunty)
> export PYTHONPATH=$(/bin/ls -d /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/*-packages); \
> { cd docs_sphinx; sphinx-build -a -E -D html_last_updated_fmt="Jul 19 2023" -b html . ../docs; }
> Running Sphinx v7.1.1
> WARNING    brian2.hears is deprecated and will be removed in a future release, please use the brian2hears package available at https://brian2hears.readthedocs.io/. If you really want to keep using it, note that it is a bridge between Brian 2 and Brian Hears from Brian 1. This is not guaranteed to work in all cases that brian.hears works. See the limitations in the online documentation. [brian2.hears]
> Creating file ./reference/brian2.__init__.check_cache.rst.
> Creating file ./reference/brian2.__init__.clear_cache.rst.
> Creating file ./reference/brian2.hears.BridgeSound.rst.
> Creating file ./reference/brian2.hears.FilterbankGroup.rst.
> Creating file ./reference/brian2.hears.Sound.rst.
> Creating file ./reference/brian2.hears.WrappedSound.rst.
> Creating file ./reference/brian2.hears.convert_unit_b1_to_b2.rst.
> Creating file ./reference/brian2.hears.convert_unit_b2_to_b1.rst.
> Creating file ./reference/brian2.hears.modify_arg.rst.
> Creating file ./reference/brian2.hears.wrap_units.rst.
> Creating file ./reference/brian2.hears.wrap_units_class.rst.
> Creating file ./reference/brian2.hears.wrap_units_property.rst.
> Creating file ./reference/brian2.only.restore_initial_state.rst.
> Creating file ./reference/brian2.rst.
> Creating file ./reference/brian2.codegen.codeobject.CodeObject.rst.
> Creating file ./reference/brian2.codegen.codeobject.check_compiler_kwds.rst.
> Creating file ./reference/brian2.codegen.codeobject.constant_or_scalar.rst.
> Creating file ./reference/brian2.codegen.codeobject.create_runner_codeobj.rst.
> Creating file ./reference/brian2.codegen.cpp_prefs.C99Check.rst.
> Creating file ./reference/brian2.codegen.cpp_prefs.compiler_supports_c99.rst.
> Creating file ./reference/brian2.codegen.cpp_prefs.get_compiler_and_args.rst.
> Creating file ./reference/brian2.codegen.cpp_prefs.get_msvc_env.rst.
> Creating file ./reference/brian2.codegen.cpp_prefs.has_flag.rst.
> Creating file ./reference/brian2.codegen.optimisation.ArithmeticSimplifier.rst.
> Creating file ./reference/brian2.codegen.optimisation.Simplifier.rst.
> Creating file ./reference/brian2.codegen.optimisation.cancel_identical_terms.rst.
> Creating file ./reference/brian2.codegen.optimisation.collect.rst.
> Creating file ./reference/brian2.codegen.optimisation.collect_commutative.rst.
> Creating file ./reference/brian2.codegen.optimisation.evaluate_expr.rst.
> Creating file ./reference/brian2.codegen.optimisation.expression_complexity.rst.
> Creating file ./reference/brian2.codegen.optimisation.optimise_statements.rst.
> Creating file ./reference/brian2.codegen.optimisation.reduced_node.rst.
> Creating file ./reference/brian2.codegen.permutation_analysis.OrderDependenceError.rst.
> Creating file ./reference/brian2.codegen.permutation_analysis.check_for_order_independence.rst.
> Creating file ./reference/brian2.codegen.statements.Statement.rst.
> Creating file ./reference/brian2.codegen.templates.CodeObjectTemplate.rst.
> Creating file ./reference/brian2.codegen.templates.LazyTemplateLoader.rst.
> Creating file ./reference/brian2.codegen.templates.MultiTemplate.rst.
> Creating file ./reference/brian2.codegen.templates.Templater.rst.
> Creating file ./reference/brian2.codegen.templates.autoindent.rst.
> Creating file ./reference/brian2.codegen.templates.autoindent_postfilter.rst.
> Creating file ./reference/brian2.codegen.templates.variables_to_array_names.rst.
> Creating file ./reference/brian2.codegen.translation.LineInfo.rst.
> Creating file ./reference/brian2.codegen.translation.analyse_identifiers.rst.
> Creating file ./reference/brian2.codegen.translation.get_identifiers_recursively.rst.
> Creating file ./reference/brian2.codegen.translation.is_scalar_expression.rst.
> Creating file ./reference/brian2.codegen.translation.make_statements.rst.
> Creating file ./reference/brian2.codegen.rst.
> Creating file ./reference/brian2.codegen.generators.GSL_generator.GSLCPPCodeGenerator.rst.
> Creating file ./reference/brian2.codegen.generators.GSL_generator.GSLCodeGenerator.rst.
> Creating file ./reference/brian2.codegen.generators.GSL_generator.GSLCythonCodeGenerator.rst.
> Creating file ./reference/brian2.codegen.generators.GSL_generator.valid_gsl_dir.rst.
> Creating file ./reference/brian2.codegen.generators.base.CodeGenerator.rst.
> Creating file ./reference/brian2.codegen.generators.cpp_generator.CPPCodeGenerator.rst.
> Creating file ./reference/brian2.codegen.generators.cpp_generator.c_data_type.rst.
> Creating file ./reference/brian2.codegen.generators.cython_generator.CythonCodeGenerator.rst.
> Creating file ./reference/brian2.codegen.generators.cython_generator.CythonNodeRenderer.rst.
> Creating file ./reference/brian2.codegen.generators.cython_generator.get_cpp_dtype.rst.
> Creating file ./reference/brian2.codegen.generators.cython_generator.get_numpy_dtype.rst.
> Creating file ./reference/brian2.codegen.generators.numpy_generator.NumpyCodeGenerator.rst.
> Creating file ./reference/brian2.codegen.generators.numpy_generator.VectorisationError.rst.
> Creating file ./reference/brian2.codegen.generators.numpy_generator.ceil_func.rst.
> Creating file ./reference/brian2.codegen.generators.numpy_generator.clip_func.rst.
> Creating file ./reference/brian2.codegen.generators.numpy_generator.floor_func.rst.
> Creating file ./reference/brian2.codegen.generators.numpy_generator.int_func.rst.
> Creating file ./reference/brian2.codegen.generators.numpy_generator.poisson_func.rst.
> Creating file ./reference/brian2.codegen.generators.numpy_generator.rand_func.rst.
> Creating file ./reference/brian2.codegen.generators.numpy_generator.randn_func.rst.
> Creating file ./reference/brian2.codegen.generators.rst.
> Creating file ./reference/brian2.codegen.runtime.rst.
> Creating file ./reference/brian2.codegen.runtime.GSLcython_rt.GSLcython_rt.GSLCompileError.rst.
> Creating file ./reference/brian2.codegen.runtime.GSLcython_rt.GSLcython_rt.GSLCythonCodeObject.rst.
> Creating file ./reference/brian2.codegen.runtime.GSLcython_rt.GSLcython_rt.IntegrationError.rst.
> Creating file ./reference/brian2.codegen.runtime.GSLcython_rt.rst.
> Creating file ./reference/brian2.codegen.runtime.cython_rt.cython_rt.CythonCodeObject.rst.
> Creating file ./reference/brian2.codegen.runtime.cython_rt.extension_manager.CythonExtensionManager.rst.
> Creating file ./reference/brian2.codegen.runtime.cython_rt.extension_manager.get_cython_cache_dir.rst.
> Creating file ./reference/brian2.codegen.runtime.cython_rt.extension_manager.get_cython_extensions.rst.
> Creating file ./reference/brian2.codegen.runtime.cython_rt.extension_manager.simplify_path_env_var.rst.
> Creating file ./reference/brian2.codegen.runtime.cython_rt.extension_manager.cython_extension_manager.rst.
> Creating file ./reference/brian2.codegen.runtime.cython_rt.rst.
> Creating file ./reference/brian2.codegen.runtime.numpy_rt.numpy_rt.LazyArange.rst.
> Creating file ./reference/brian2.codegen.runtime.numpy_rt.numpy_rt.NumpyCodeObject.rst.
> Creating file ./reference/brian2.codegen.runtime.numpy_rt.rst.
> Creating file ./reference/brian2.core.base.BrianObject.rst.
> Creating file ./reference/brian2.core.base.BrianObjectException.rst.
> Creating file ./reference/brian2.core.base.brian_object_exception.rst.
> Creating file ./reference/brian2.core.base.device_override.rst.
> Creating file ./reference/brian2.core.base.weakproxy_with_fallback.rst.
> Creating file ./reference/brian2.core.clocks.Clock.rst.
> Creating file ./reference/brian2.core.clocks.DefaultClockProxy.rst.
> Creating file ./reference/brian2.core.clocks.check_dt.rst.
> Creating file ./reference/brian2.core.clocks.defaultclock.rst.
> Creating file ./reference/brian2.core.core_preferences.default_float_dtype_validator.rst.
> Creating file ./reference/brian2.core.core_preferences.dtype_repr.rst.
> Creating file ./reference/brian2.core.functions.Function.rst.
> Creating file ./reference/brian2.core.functions.FunctionImplementation.rst.
> Creating file ./reference/brian2.core.functions.FunctionImplementationContainer.rst.
> Creating file ./reference/brian2.core.functions.SymbolicConstant.rst.
> Creating file ./reference/brian2.core.functions.exprel.rst.
> Creating file ./reference/brian2.core.functions.declare_types.rst.
> Creating file ./reference/brian2.core.functions.implementation.rst.
> Creating file ./reference/brian2.core.functions.timestep.rst.
> Creating file ./reference/brian2.core.magic.MagicError.rst.
> Creating file ./reference/brian2.core.magic.MagicNetwork.rst.
> Creating file ./reference/brian2.core.magic.collect.rst.
> Creating file ./reference/brian2.core.magic.get_objects_in_namespace.rst.
> Creating file ./reference/brian2.core.magic.restore.rst.
> Creating file ./reference/brian2.core.magic.run.rst.
> Creating file ./reference/brian2.core.magic.start_scope.rst.
> Creating file ./reference/brian2.core.magic.stop.rst.
> Creating file ./reference/brian2.core.magic.store.rst.
> Creating file ./reference/brian2.core.magic.magic_network.rst.
> Creating file ./reference/brian2.core.names.Nameable.rst.
> Creating file ./reference/brian2.core.names.find_name.rst.
> Creating file ./reference/brian2.core.namespace.get_local_namespace.rst.
> Creating file ./reference/brian2.core.network.Network.rst.
> Creating file ./reference/brian2.core.network.ProfilingSummary.rst.
> Creating file ./reference/brian2.core.network.SchedulingSummary.rst.
> Creating file ./reference/brian2.core.network.TextReport.rst.
> Creating file ./reference/brian2.core.network.profiling_summary.rst.
> Creating file ./reference/brian2.core.network.schedule_propagation_offset.rst.
> Creating file ./reference/brian2.core.network.scheduling_summary.rst.
> Creating file ./reference/brian2.core.operations.NetworkOperation.rst.
> Creating file ./reference/brian2.core.operations.network_operation.rst.
> Creating file ./reference/brian2.core.preferences.BrianGlobalPreferences.rst.
> Creating file ./reference/brian2.core.preferences.BrianGlobalPreferencesView.rst.
> Creating file ./reference/brian2.core.preferences.BrianPreference.rst.
> Creating file ./reference/brian2.core.preferences.DefaultValidator.rst.
> Creating file ./reference/brian2.core.preferences.ErrorRaiser.rst.
> Creating file ./reference/brian2.core.preferences.PreferenceError.rst.
> Creating file ./reference/brian2.core.preferences.check_preference_name.rst.
> Creating file ./reference/brian2.core.preferences.parse_preference_name.rst.
> Creating file ./reference/brian2.core.preferences.brian_prefs.rst.
> Creating file ./reference/brian2.core.preferences.prefs.rst.
> Creating file ./reference/brian2.core.spikesource.SpikeSource.rst.
> Creating file ./reference/brian2.core.tracking.InstanceFollower.rst.
> Creating file ./reference/brian2.core.tracking.InstanceTrackerSet.rst.
> Creating file ./reference/brian2.core.tracking.Trackable.rst.
> Creating file ./reference/brian2.core.variables.ArrayVariable.rst.
> Creating file ./reference/brian2.core.variables.AuxiliaryVariable.rst.
> Creating file ./reference/brian2.core.variables.Constant.rst.
> Creating file ./reference/brian2.core.variables.DynamicArrayVariable.rst.
> Creating file ./reference/brian2.core.variables.LinkedVariable.rst.
> Creating file ./reference/brian2.core.variables.Subexpression.rst.
> Creating file ./reference/brian2.core.variables.Variable.rst.
> Creating file ./reference/brian2.core.variables.VariableView.rst.
> Creating file ./reference/brian2.core.variables.Variables.rst.
> Creating file ./reference/brian2.core.variables.get_dtype.rst.
> Creating file ./reference/brian2.core.variables.get_dtype_str.rst.
> Creating file ./reference/brian2.core.variables.linked_var.rst.
> Creating file ./reference/brian2.core.variables.variables_by_owner.rst.
> Creating file ./reference/brian2.core.rst.
> Creating file ./reference/brian2.devices.device.CurrentDeviceProxy.rst.
> Creating file ./reference/brian2.devices.device.Device.rst.
> Creating file ./reference/brian2.devices.device.Dummy.rst.
> Creating file ./reference/brian2.devices.device.RuntimeDevice.rst.
> Creating file ./reference/brian2.devices.device.auto_target.rst.
> Creating file ./reference/brian2.devices.device.get_device.rst.
> Creating file ./reference/brian2.devices.device.reinit_and_delete.rst.
> Creating file ./reference/brian2.devices.device.reinit_devices.rst.
> Creating file ./reference/brian2.devices.device.reset_device.rst.
> Creating file ./reference/brian2.devices.device.seed.rst.
> Creating file ./reference/brian2.devices.device.set_device.rst.
> Creating file ./reference/brian2.devices.device.active_device.rst.
> Creating file ./reference/brian2.devices.device.device.rst.
> Creating file ./reference/brian2.devices.device.runtime_device.rst.
> Creating file ./reference/brian2.devices.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.GSLcodeobject.GSLCPPStandaloneCodeObject.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.codeobject.CPPStandaloneCodeObject.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.codeobject.generate_rand_code.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.codeobject.openmp_pragma.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.device.CPPStandaloneDevice.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.device.CPPWriter.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.device.RunFunctionContext.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.device.invert_dict.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.device.cpp_standalone_device.rst.
> Creating file ./reference/brian2.devices.cpp_standalone.rst.
> Creating file ./reference/brian2.equations.codestrings.CodeString.rst.
> Creating file ./reference/brian2.equations.codestrings.Expression.rst.
> Creating file ./reference/brian2.equations.codestrings.Statements.rst.
> Creating file ./reference/brian2.equations.codestrings.is_constant_over_dt.rst.
> Creating file ./reference/brian2.equations.equations.EquationError.rst.
> Creating file ./reference/brian2.equations.equations.Equations.rst.
> Creating file ./reference/brian2.equations.equations.SingleEquation.rst.
> Creating file ./reference/brian2.equations.equations.check_identifier_basic.rst.
> Creating file ./reference/brian2.equations.equations.check_identifier_constants.rst.
> Creating file ./reference/brian2.equations.equations.check_identifier_functions.rst.
> Creating file ./reference/brian2.equations.equations.check_identifier_reserved.rst.
> Creating file ./reference/brian2.equations.equations.check_identifier_units.rst.
> Creating file ./reference/brian2.equations.equations.check_subexpressions.rst.
> Creating file ./reference/brian2.equations.equations.dimensions_and_type_from_string.rst.
> Creating file ./reference/brian2.equations.equations.extract_constant_subexpressions.rst.
> Creating file ./reference/brian2.equations.equations.is_stateful.rst.
> Creating file ./reference/brian2.equations.equations.parse_string_equations.rst.
> Creating file ./reference/brian2.equations.refractory.add_refractoriness.rst.
> Creating file ./reference/brian2.equations.refractory.check_identifier_refractory.rst.
> Creating file ./reference/brian2.equations.unitcheck.check_dimensions.rst.
> Creating file ./reference/brian2.equations.unitcheck.check_units_statements.rst.
> Creating file ./reference/brian2.equations.rst.
> Creating file ./reference/brian2.groups.group.CodeRunner.rst.
> Creating file ./reference/brian2.groups.group.Group.rst.
> Creating file ./reference/brian2.groups.group.IndexWrapper.rst.
> Creating file ./reference/brian2.groups.group.Indexing.rst.
> Creating file ./reference/brian2.groups.group.VariableOwner.rst.
> Creating file ./reference/brian2.groups.group.get_dtype.rst.
> Creating file ./reference/brian2.groups.neurongroup.NeuronGroup.rst.
> Creating file ./reference/brian2.groups.neurongroup.Resetter.rst.
> Creating file ./reference/brian2.groups.neurongroup.StateUpdater.rst.
> Creating file ./reference/brian2.groups.neurongroup.SubexpressionUpdater.rst.
> Creating file ./reference/brian2.groups.neurongroup.Thresholder.rst.
> Creating file ./reference/brian2.groups.neurongroup.check_identifier_pre_post.rst.
> Creating file ./reference/brian2.groups.neurongroup.to_start_stop.rst.
> Creating file ./reference/brian2.groups.subgroup.Subgroup.rst.
> Creating file ./reference/brian2.groups.rst.
> Creating file ./reference/brian2.importexport.dictlike.DictImportExport.rst.
> Creating file ./reference/brian2.importexport.dictlike.PandasImportExport.rst.
> Creating file ./reference/brian2.importexport.importexport.ImportExport.rst.
> Creating file ./reference/brian2.importexport.rst.
> Creating file ./reference/brian2.input.binomial.BinomialFunction.rst.
> Creating file ./reference/brian2.input.poissongroup.PoissonGroup.rst.
> Creating file ./reference/brian2.input.poissoninput.PoissonInput.rst.
> Creating file ./reference/brian2.input.spikegeneratorgroup.SpikeGeneratorGroup.rst.
> Creating file ./reference/brian2.input.timedarray.TimedArray.rst.
> Creating file ./reference/brian2.input.rst.
> Creating file ./reference/brian2.memory.dynamicarray.DynamicArray.rst.
> Creating file ./reference/brian2.memory.dynamicarray.DynamicArray1D.rst.
> Creating file ./reference/brian2.memory.dynamicarray.getslices.rst.
> Creating file ./reference/brian2.memory.rst.
> Creating file ./reference/brian2.monitors.ratemonitor.PopulationRateMonitor.rst.
> Creating file ./reference/brian2.monitors.spikemonitor.EventMonitor.rst.
> Creating file ./reference/brian2.monitors.spikemonitor.SpikeMonitor.rst.
> Creating file ./reference/brian2.monitors.statemonitor.StateMonitor.rst.
> Creating file ./reference/brian2.monitors.statemonitor.StateMonitorView.rst.
> Creating file ./reference/brian2.monitors.rst.
> Creating file ./reference/brian2.parsing.bast.BrianASTRenderer.rst.
> Creating file ./reference/brian2.parsing.bast.brian_ast.rst.
> Creating file ./reference/brian2.parsing.bast.brian_dtype_from_dtype.rst.
> Creating file ./reference/brian2.parsing.bast.brian_dtype_from_value.rst.
> Creating file ./reference/brian2.parsing.bast.is_boolean.rst.
> Creating file ./reference/brian2.parsing.bast.is_boolean_dtype.rst.
> Creating file ./reference/brian2.parsing.bast.is_float.rst.
> Creating file ./reference/brian2.parsing.bast.is_float_dtype.rst.
> Creating file ./reference/brian2.parsing.bast.is_integer.rst.
> Creating file ./reference/brian2.parsing.bast.is_integer_dtype.rst.
> Creating file ./reference/brian2.parsing.dependencies.abstract_code_dependencies.rst.
> Creating file ./reference/brian2.parsing.dependencies.get_read_write_funcs.rst.
> Creating file ./reference/brian2.parsing.expressions.is_boolean_expression.rst.
> Creating file ./reference/brian2.parsing.expressions.parse_expression_dimensions.rst.
> Creating file ./reference/brian2.parsing.functions.AbstractCodeFunction.rst.
> Creating file ./reference/brian2.parsing.functions.FunctionRewriter.rst.
> Creating file ./reference/brian2.parsing.functions.VarRewriter.rst.
> Creating file ./reference/brian2.parsing.functions.abstract_code_from_function.rst.
> Creating file ./reference/brian2.parsing.functions.extract_abstract_code_functions.rst.
> Creating file ./reference/brian2.parsing.functions.substitute_abstract_code_functions.rst.
> Creating file ./reference/brian2.parsing.rendering.CPPNodeRenderer.rst.
> Creating file ./reference/brian2.parsing.rendering.NodeRenderer.rst.
> Creating file ./reference/brian2.parsing.rendering.NumpyNodeRenderer.rst.
> Creating file ./reference/brian2.parsing.rendering.SympyNodeRenderer.rst.
> Creating file ./reference/brian2.parsing.rendering.get_node_value.rst.
> Creating file ./reference/brian2.parsing.statements.parse_statement.rst.
> Creating file ./reference/brian2.parsing.sympytools.CustomSympyPrinter.rst.
> Creating file ./reference/brian2.parsing.sympytools.check_expression_for_multiple_stateful_functions.rst.
> Creating file ./reference/brian2.parsing.sympytools.expression_complexity.rst.
> Creating file ./reference/brian2.parsing.sympytools.str_to_sympy.rst.
> Creating file ./reference/brian2.parsing.sympytools.sympy_to_str.rst.
> Creating file ./reference/brian2.parsing.sympytools.PRINTER.rst.
> Creating file ./reference/brian2.parsing.rst.
> Creating file ./reference/brian2.random.rst.
> Creating file ./reference/brian2.spatialneuron.morphology.Children.rst.
> Creating file ./reference/brian2.spatialneuron.morphology.Cylinder.rst.
> Creating file ./reference/brian2.spatialneuron.morphology.Morphology.rst.
> Creating file ./reference/brian2.spatialneuron.morphology.MorphologyIndexWrapper.rst.
> Creating file ./reference/brian2.spatialneuron.morphology.Node.rst.
> Creating file ./reference/brian2.spatialneuron.morphology.Section.rst.
> Creating file ./reference/brian2.spatialneuron.morphology.Soma.rst.
> Creating file ./reference/brian2.spatialneuron.morphology.SubMorphology.rst.
> Creating file ./reference/brian2.spatialneuron.morphology.Topology.rst.
> Creating file ./reference/brian2.spatialneuron.spatialneuron.FlatMorphology.rst.
> Creating file ./reference/brian2.spatialneuron.spatialneuron.SpatialNeuron.rst.
> Creating file ./reference/brian2.spatialneuron.spatialneuron.SpatialStateUpdater.rst.
> Creating file ./reference/brian2.spatialneuron.spatialneuron.SpatialSubgroup.rst.
> Creating file ./reference/brian2.spatialneuron.rst.
> Creating file ./reference/brian2.stateupdaters.GSL.GSLContainer.rst.
> Creating file ./reference/brian2.stateupdaters.GSL.GSLStateUpdater.rst.
> Creating file ./reference/brian2.stateupdaters.GSL.gsl_rk2.rst.
> Creating file ./reference/brian2.stateupdaters.GSL.gsl_rk4.rst.
> Creating file ./reference/brian2.stateupdaters.GSL.gsl_rk8pd.rst.
> Creating file ./reference/brian2.stateupdaters.GSL.gsl_rkck.rst.
> Creating file ./reference/brian2.stateupdaters.GSL.gsl_rkf45.rst.
> Creating file ./reference/brian2.stateupdaters.base.StateUpdateMethod.rst.
> Creating file ./reference/brian2.stateupdaters.base.UnsupportedEquationsException.rst.
> Creating file ./reference/brian2.stateupdaters.base.extract_method_options.rst.
> Creating file ./reference/brian2.stateupdaters.exact.IndependentStateUpdater.rst.
> Creating file ./reference/brian2.stateupdaters.exact.LinearStateUpdater.rst.
> Creating file ./reference/brian2.stateupdaters.exact.get_linear_system.rst.
> Creating file ./reference/brian2.stateupdaters.exact.exact.rst.
> Creating file ./reference/brian2.stateupdaters.exact.independent.rst.
> Creating file ./reference/brian2.stateupdaters.exact.linear.rst.
> Creating file ./reference/brian2.stateupdaters.explicit.ExplicitStateUpdater.rst.
> Creating file ./reference/brian2.stateupdaters.explicit.diagonal_noise.rst.
> Creating file ./reference/brian2.stateupdaters.explicit.split_expression.rst.
> Creating file ./reference/brian2.stateupdaters.explicit.euler.rst.
> Creating file ./reference/brian2.stateupdaters.explicit.heun.rst.
> Creating file ./reference/brian2.stateupdaters.explicit.milstein.rst.
> Creating file ./reference/brian2.stateupdaters.explicit.rk2.rst.
> Creating file ./reference/brian2.stateupdaters.explicit.rk4.rst.
> Creating file ./reference/brian2.stateupdaters.exponential_euler.ExponentialEulerStateUpdater.rst.
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> Documenting 92 examples
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> [autosummary] generating autosummary for: advanced/custom_events.rst, advanced/functions.rst, advanced/how_brian_works.rst, advanced/index.rst, advanced/interface.rst, advanced/logging.rst, advanced/namespaces.rst, advanced/preferences.rst, advanced/random.rst, advanced/scheduling.rst, ..., user/input.rst, user/models.rst, user/multicompartmental.rst, user/numerical_integration.rst, user/plotting_functions.rst, user/recording.rst, user/refractoriness.rst, user/running.rst, user/synapses.rst, user/units.rst
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> WARNING    /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/brian2/sphinxext/docscrape.py:122: UserWarning: Unknown section Explanation
>   warn(f"Unknown section {key}")
>  [py.warnings]
> WARNING    /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/brian2/sphinxext/docscrape.py:122: UserWarning: Unknown section Explanation
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>  [py.warnings]
> WARNING    /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/brian2/sphinxext/docscrape.py:122: UserWarning: Unknown section Explanation
>   warn(f"Unknown section {key}")
>  [py.warnings]
> WARNING    /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/brian2/sphinxext/docscrape.py:122: UserWarning: Unknown section Explanation
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>  [py.warnings]
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> 
> /<<PKGBUILDDIR>>/docs_sphinx/examples/frompapers.Naud_et_al_2008_adex_firing_patterns.rst:23: WARNING: Title underline too short.
> 
> Firing patterns in the adaptive exponential integrate-and-fire model
> -----------------------
> /<<PKGBUILDDIR>>/docs_sphinx/index.rst:50: WARNING: toctree contains reference to nonexisting document 'resources/tutorials/index'
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/install.rst:28: ERROR: Unknown directive type "tabs".
> 
> .. tabs::
> 
>     .. group-tab:: conda package
> 
>        We recommend installing Brian into a separate environment, see
>        `conda's documentation <https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html>`_
>        for more details.
>        Brian 2 is not part of the main Anaconda distribution, but built using the community-maintained
>        `conda-forge <https://conda-forge.org/>`_ project. You will therefore have to to install it from the
>        `conda-forge channel <https://anaconda.org/conda-forge>`_. To do so, use::
> 
>          conda install -c conda-forge brian2
> 
>        You can also permanently add the channel to your list of channels::
> 
>          conda config --add channels conda-forge
> 
>        This has only to be done once. After that, you can install and update the brian2 packages as any other
>        Anaconda package::
> 
>          conda install brian2
> 
> 
>     .. group-tab:: PyPI package (``pip``)
> 
>        We recommend installing Brian into a separate "virtual environment", see the
>        `Python Packaging User Guide <https://packaging.python.org/guides/installing-using-pip-and-virtual-environments/>`_
>        for more information.
>        Brian is included in the PyPI package index: https://pypi.python.org/pypi/Brian2
>        You can therefore install it with the ``pip`` utility::
> 
>          python -m pip install brian2
> 
>        In rare cases where your current environment does not have access to the ``pip`` utility, you first
>        have to install ``pip`` via::
> 
>          python -m ensurepip
> 
>     .. group-tab:: Ubuntu/Debian package
> 
>        If you are using a recent `Debian <https://debian.org>`_-based Linux distribution (Debian itself, or one if its
>        derivatives like `Ubuntu <https://ubuntu.com>`_ or `Linux Mint <https://linuxmint.com/>`_), you can install Brian
>        using its built-in package manager::
> 
>          sudo apt install python3-brian
> 
>        Brian releases get packaged by the `Debian Med <https://www.debian.org/devel/debian-med/>`_ team, but note that
>        it might take a while until the most recent version shows up in the repository.
> 
>     .. group-tab:: Fedora package
> 
>        If you are using `Fedora Linux <https://getfedora.org/>`_, you can install Brian using its built-in package
>        manager::
> 
>         sudo dnf install python-brian2
> 
>        Brian releases get packaged by the `NeuroFedora <https://docs.fedoraproject.org/en-US/neurofedora/overview/>`_ team,
>        but note that it might take a while until the most recent version shows up in the repository.
> 
>     .. group-tab:: Spack package
> 
>        `Spack <https://spack.io>`_ is a flexible package manager supporting multiple versions, configurations, platforms, and compilers.
> 
>        After setting up Spack you can install Brian with the following command::
> 
>          spack install py-brian2
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/install.rst:103: ERROR: Unknown directive type "tabs".
> 
> .. tabs::
> 
>   .. group-tab:: conda package
> 
>     Depending on whether you added the ``conda-forge`` channel to the list of channels
>     or not (see above), you either have to include it in the update command again or
>     can leave it away. I.e. use::
> 
>       conda update -c conda-forge brian2
> 
>     if you did not add the channel, or::
> 
>       conda update brian2
> 
>     if you did.
> 
>   .. group-tab:: PyPI package (``pip``)
> 
>     Use the install command together with the ``--upgrade`` or ``-U`` option::
> 
>       python -m pip install -U brian2
> 
>   .. group-tab:: Ubuntu/Debian package
> 
>     Update the package repository and ask for an install. Note that the package will
>     also be updated automatically with commands like ``sudo apt full-upgrade``::
> 
>       sudo apt update
>       sudo apt install python3-brian
> 
>   .. group-tab:: Fedora package
> 
>     Update the package repository (not necessary in general, since it will be updated
>     regularly without asking for it), and ask for an update. Note that the package will
>     also be updated automatically with commands like ``sudo dnf upgrade``::
> 
>       sudo dnf check-update python-brian2
>       sudo dnf upgrade python-brian2
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/install.rst:153: ERROR: Unknown directive type "tabs".
> 
> .. tabs::
> 
>    .. tab:: Linux and OS X
> 
>       On Linux and Mac OS X, the conda package will automatically install a C++ compiler.
>       But even if you install Brian in a different way, you will most likely already have a
>       working C++ compiler installed on your system (try calling ``g++ --version``
>       in a terminal). If not, use your distribution's package manager to install a ``g++`` package.
> 
>    .. tab:: Windows
> 
>       On Windows, :ref:`runtime` (i.e. Cython) requires the Visual Studio compiler, but you do not need a full Visual
>       Studio installation, installing the much smaller "Build Tools" package is sufficient:
> 
>       * Install the `Microsoft Build Tools for Visual Studio <https://visualstudio.microsoft.com/visual-cpp-build-tools/>`_.
>       * In Build tools, install C++ build tools and ensure the latest versions of MSVCv... build tools and Windows 10 SDK are checked.
>       * Make sure that your ``setuptools`` package has at least version 34.4.0 (use ``conda update setuptools`` when
>         using Anaconda, or ``python -m pip install --upgrade setuptools`` when using pip).
> 
>       For :ref:`cpp_standalone`, you can either use the compiler installed above or any other version of Visual Studio.
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/install.rst:208: ERROR: Unknown directive type "tabs".
> 
> .. tabs::
>     .. group-tab:: conda package
> 
>        ::
> 
>          conda install matplotlib pytest ipython notebook
> 
>     .. group-tab:: PyPI package (``pip``)
> 
>        ::
> 
>          python -m pip install matplotlib pytest ipython notebook
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/install.rst:224: ERROR: Unknown directive type "tabs".
> 
> .. tabs::
>     .. group-tab:: conda package
> 
>        As of now, ``brian2tools`` is not yet included in the ``conda-forge``
>        channel, you therefore have to install it from our own ``brian-team`` channel::
> 
>          conda install -c brian-team brian2tools
> 
>     .. group-tab:: PyPI package (``pip``)
> 
>        ::
> 
>          python -m pip install brian2tools
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/release_notes.rst:2: WARNING: Duplicate explicit target name: "blog post".
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/release_notes.rst:2: WARNING: Duplicate explicit target name: "@felix11h".
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/release_notes.rst:2: WARNING: Duplicate explicit target name: "appveyor".
> /usr/lib/python3/dist-packages/pyparsing/core.py:docstring of brian2.stateupdaters.explicit.ExplicitStateUpdater.DESCRIPTION:1: WARNING: duplicate object description of brian2.stateupdaters.explicit.ExplicitStateUpdater.DESCRIPTION, other instance in reference/brian2.stateupdaters.explicit.ExplicitStateUpdater, use :noindex: for one of them
> /usr/lib/python3/dist-packages/pyparsing/core.py:docstring of brian2.stateupdaters.explicit.ExplicitStateUpdater.EXPRESSION:1: WARNING: duplicate object description of brian2.stateupdaters.explicit.ExplicitStateUpdater.EXPRESSION, other instance in reference/brian2.stateupdaters.explicit.ExplicitStateUpdater, use :noindex: for one of them
> /usr/lib/python3/dist-packages/pyparsing/core.py:docstring of brian2.stateupdaters.explicit.ExplicitStateUpdater.OUTPUT:1: WARNING: duplicate object description of brian2.stateupdaters.explicit.ExplicitStateUpdater.OUTPUT, other instance in reference/brian2.stateupdaters.explicit.ExplicitStateUpdater, use :noindex: for one of them
> /usr/lib/python3/dist-packages/pyparsing/core.py:docstring of brian2.stateupdaters.explicit.ExplicitStateUpdater.STATEMENT:1: WARNING: duplicate object description of brian2.stateupdaters.explicit.ExplicitStateUpdater.STATEMENT, other instance in reference/brian2.stateupdaters.explicit.ExplicitStateUpdater, use :noindex: for one of them
> /usr/lib/python3/dist-packages/pyparsing/core.py:docstring of brian2.stateupdaters.explicit.ExplicitStateUpdater.TEMP_VAR:1: WARNING: duplicate object description of brian2.stateupdaters.explicit.ExplicitStateUpdater.TEMP_VAR, other instance in reference/brian2.stateupdaters.explicit.ExplicitStateUpdater, use :noindex: for one of them
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> 
> /<<PKGBUILDDIR>>/docs_sphinx/index.rst:23: WARNING: unknown document: '/resources/tutorials/index'
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/release_notes.rst:978: WARNING: unknown document: '../resources/tutorials/3-intro-to-brian-simulations'
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/release_notes.rst:1720: WARNING: unknown document: '../resources/tutorials/index'
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/scripts.rst:26: WARNING: unknown document: '../resources/tutorials/index'
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/scripts.rst:34: WARNING: unknown document: '../resources/tutorials/index'
> /<<PKGBUILDDIR>>/docs_sphinx/introduction/scripts.rst:34: WARNING: unknown document: '../resources/tutorials/index'
> /<<PKGBUILDDIR>>/docs_sphinx/user/converting_from_integrated_form.rst:93: WARNING: unknown document: '/resources/tutorials/2-intro-to-brian-synapses'
> generating indices... genindex py-modindex done
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> 
> writing additional pages... search done
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> 
> dumping search index in English (code: en)... done
> dumping object inventory... done
> build succeeded, 26 warnings.
> 
> The HTML pages are in ../docs.
> rmdir -rf docs_sphinx/_static	# remove directory possibly created above
> rmdir: invalid option -- 'r'
> Try 'rmdir --help' for more information.
> make[1]: [debian/rules:45: override_dh_auto_install] Error 1 (ignored)
> rm docs/_static/jquery.js
> rm: cannot remove 'docs/_static/jquery.js': No such file or directory
> make[1]: *** [debian/rules:46: override_dh_auto_install] Error 1


The full build log is available from:
http://qa-logs.debian.net/2023/07/30/exp/brian_2.5.4-1_unstable_sphinx-exp.log

Please see [1] for Sphinx changelog and [2] for Docutils changelog.

Also see [3] for the list of deprecated/removed APIs in Sphinx and possible
alternatives to them.

Some notable changes in Sphinx 6 and Sphinx 7:

- Sphinx no longer includes jquery.js and underscore.js by default.
  Please use python3-sphinxcontrib.jquery package if you are using a custom
  template and it still needs jquery.

- The setup.py build_sphinx command was removed. Please instead call
  sphinx-build or "python3 -m sphinx" directly.

- For packages using the extlinks extension, the caption should contain
  exactly one "%s" placeholder (if caption is not None).

In case you have questions, please Cc sphinx at packages.debian.org on reply.

[1]: https://www.sphinx-doc.org/en/master/changes.html
[2]: https://repo.or.cz/docutils.git/blob/refs/tags/docutils-0.20.1:/RELEASE-NOTES.txt
[3]: https://www.sphinx-doc.org/en/master/extdev/deprecated.html#dev-deprecated-apis

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=sphinx7.1;users=python-modules-team@lists.alioth.debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=sphinx7.1&fusertaguser=python-modules-team@lists.alioth.debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects