[Debian-med-packaging] Bug#1037708: kmc: ftbfs with GCC-13

[Matthias Klose]

Package: src:kmc
Version: 3.2.1+dfsg-1
Severity: normal
Tags: sid trixie
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-13

[This bug is targeted to the upcoming trixie release]

Please keep this issue open in the bug tracker for the package it
was filed for.  If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.

The package fails to build in a test rebuild on at least amd64 with
gcc-13/g++-13, but succeeds to build with gcc-12/g++-12. The
severity of this report will be raised before the trixie release.

The full build log can be found at:
http://qa-logs.debian.net/2023/05/22/logs/kmc_3.2.1+dfsg-1_unstable_gccexp.log
The last lines of the build log are at the end of this report.

To build with GCC 13, either set CC=gcc-13 CXX=g++-13 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t=experimental install g++ 

Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-13/porting_to.html

[...]
                 from kmc_core/bkb_writer.cpp:11:
kmc_core/critical_error_handler.h: In member function ‘void CCriticalErrorHandler::HandleCriticalError(const std::string&)’:
kmc_core/critical_error_handler.h:77:28: error: ‘runtime_error’ is not a member of ‘std’
   77 |                 throw std::runtime_error(msg);
      |                            ^~~~~~~~~~~~~
kmc_core/critical_error_handler.h:7:1: note: ‘std::runtime_error’ is defined in header ‘<stdexcept>’; did you forget to ‘#include <stdexcept>’?
    6 | #include <condition_variable>
  +++ |+#include <stdexcept>
    7 | 
In file included from kmc_core/queues.h:23,
                 from kmc_core/params.h:16,
                 from kmc_core/fastq_reader.h:15,
                 from kmc_core/fastq_reader.cpp:13:
kmc_core/critical_error_handler.h: In member function ‘void CCriticalErrorHandler::HandleCriticalError(const std::string&)’:
kmc_core/critical_error_handler.h:77:28: error: ‘runtime_error’ is not a member of ‘std’
   77 |                 throw std::runtime_error(msg);
      |                            ^~~~~~~~~~~~~
kmc_core/critical_error_handler.h:7:1: note: ‘std::runtime_error’ is defined in header ‘<stdexcept>’; did you forget to ‘#include <stdexcept>’?
    6 | #include <condition_variable>
  +++ |+#include <stdexcept>
    7 | 
In file included from kmc_core/queues.h:23,
                 from kmc_core/params.h:16,
                 from kmc_core/develop.cpp:3:
kmc_core/critical_error_handler.h: In member function ‘void CCriticalErrorHandler::HandleCriticalError(const std::string&)’:
kmc_core/critical_error_handler.h:77:28: error: ‘runtime_error’ is not a member of ‘std’
   77 |                 throw std::runtime_error(msg);
      |                            ^~~~~~~~~~~~~
kmc_core/critical_error_handler.h:7:1: note: ‘std::runtime_error’ is defined in header ‘<stdexcept>’; did you forget to ‘#include <stdexcept>’?
    6 | #include <condition_variable>
  +++ |+#include <stdexcept>
    7 | 
make[2]: *** [Makefile:98: kmc_core/mem_disk_file.o] Error 1
make[2]: *** Waiting for unfinished jobs....
In file included from kmc_core/queues.h:23,
                 from kmc_core/params.h:16,
                 from kmc_core/kb_completer.h:14,
                 from kmc_core/kb_completer.cpp:12:
kmc_core/critical_error_handler.h: In member function ‘void CCriticalErrorHandler::HandleCriticalError(const std::string&)’:
kmc_core/critical_error_handler.h:77:28: error: ‘runtime_error’ is not a member of ‘std’
   77 |                 throw std::runtime_error(msg);
      |                            ^~~~~~~~~~~~~
kmc_core/critical_error_handler.h:7:1: note: ‘std::runtime_error’ is defined in header ‘<stdexcept>’; did you forget to ‘#include <stdexcept>’?
    6 | #include <condition_variable>
  +++ |+#include <stdexcept>
    7 | 
In file included from kmc_core/queues.h:23,
                 from kmc_core/params.h:16,
                 from kmc_core/kb_storer.h:15,
                 from kmc_core/kb_storer.cpp:12:
kmc_core/critical_error_handler.h: In member function ‘void CCriticalErrorHandler::HandleCriticalError(const std::string&)’:
kmc_core/critical_error_handler.h:77:28: error: ‘runtime_error’ is not a member of ‘std’
   77 |                 throw std::runtime_error(msg);
      |                            ^~~~~~~~~~~~~
kmc_core/critical_error_handler.h:7:1: note: ‘std::runtime_error’ is defined in header ‘<stdexcept>’; did you forget to ‘#include <stdexcept>’?
    6 | #include <condition_variable>
  +++ |+#include <stdexcept>
    7 | 
make[2]: *** [Makefile:98: kmc_core/bkb_writer.o] Error 1
make[2]: *** [Makefile:98: kmc_core/bkb_reader.o] Error 1
make[2]: *** [Makefile:98: kmc_core/develop.o] Error 1
make[2]: *** [Makefile:98: kmc_core/fastq_reader.o] Error 1
make[2]: *** [Makefile:98: kmc_core/kb_storer.o] Error 1
make[2]: *** [Makefile:98: kmc_core/kb_completer.o] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j8 "INSTALL=install --strip-program=true" SIMD=1 returned exit code 2
make[1]: *** [debian/rules:21: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:17: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2