[Debian-med-packaging] Bug#1037816: parsinsert: ftbfs with GCC-13

[Matthias Klose]

Package: src:parsinsert
Version: 1.04-12
Severity: normal
Tags: sid trixie
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-13

[This bug is targeted to the upcoming trixie release]

Please keep this issue open in the bug tracker for the package it
was filed for.  If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.

The package fails to build in a test rebuild on at least amd64 with
gcc-13/g++-13, but succeeds to build with gcc-12/g++-12. The
severity of this report will be raised before the trixie release.

The full build log can be found at:
http://qa-logs.debian.net/2023/05/22/logs/parsinsert_1.04-12_unstable_gccexp.log
The last lines of the build log are at the end of this report.

To build with GCC 13, either set CC=gcc-13 CXX=g++-13 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t=experimental install g++ 

Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-13/porting_to.html

[...]
======================================================================

Insertion: [               93086] [ 1173 sites]
		    0 [100%] [136346][Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
	      0 (   0 diffs,    0 partials,    0 indels) [Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] 
Assigned Taxonomy:[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
 Correct Taxonomy:[Archaea;Euryarchaeota;Thermoplasmata;Thermoplasmatales;Thermoplasmataceae;Thermoplasma]
======================================================================

Insertion: [               93354] [ 1218 sites]
		    0 [100%] [136346][Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
	      0 (   0 diffs,    0 partials,    0 indels) [Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] 
Assigned Taxonomy:[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
 Correct Taxonomy:[Bacteria;Bacteroidetes;Sphingobacteria;Sphingobacteriales]
======================================================================

Insertion: [                9475] [ 1283 sites]
		    0 [100%] [136346][Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
	      0 (   0 diffs,    0 partials,    0 indels) [Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] 
Assigned Taxonomy:[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
 Correct Taxonomy:[Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Actinobacillus]
======================================================================

Insertion: [               95741] [ 1280 sites]
		    0 [100%] [136346][Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
	      0 (   0 diffs,    0 partials,    0 indels) [Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] 
Assigned Taxonomy:[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
 Correct Taxonomy:[Bacteria;Proteobacteria;Alphaproteobacteria;Rhizobiales;Rhodobiaceae;Parvibaculum]
======================================================================

Insertion: [               99538] [ 1184 sites]
		    0 [100%] [136346][Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
	      0 (   0 diffs,    0 partials,    0 indels) [Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] 
Assigned Taxonomy:[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
 Correct Taxonomy:[Bacteria;Bacteroidetes;Flavobacteria;Flavobacteriales;Flavobacteriaceae;Chryseobacterium]
======================================================================

Insertion: [               99764] [ 1261 sites]
		    0 [100%] [136346][Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
	      0 (   0 diffs,    0 partials,    0 indels) [Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium] 
Assigned Taxonomy:[Bacteria;Actinobacteria;Actinobacteria;Acidimicrobidae;Acidimicrobiales;Acidimicrobineae;Acidimicrobiaceae;Acidimicrobium]
 Correct Taxonomy:[Bacteria;Proteobacteria;Alphaproteobacteria;Rhizobiales;Brucellaceae;Brucella]
Taxonomies List:
 [root] 957
    [Bacteria] 957
       [Actinobacteria] 957
          [Actinobacteria] 957
             [Acidimicrobidae] 957
                [Acidimicrobiales] 957
                   [Acidimicrobineae] 957
                      [Acidimicrobiaceae] 957
                         [Acidimicrobium] 957
Writing Newick tree file: [set1000.tree]

Rank Matches:
                     _________Precision________    __________Recall__________
	    Domain:      957      938 ( 98.01%)          938      957 ( 98.01%)
	    Phylum:      957       83 (  8.67%)           83      957 (  8.67%)
	     Class:      957       83 (  8.67%)           83      957 (  8.67%)
	     Order:      915        0 (  0.00%)            0      915 (  0.00%)
	    Family:      876        0 (  0.00%)            0      876 (  0.00%)
	     Genus:      706        0 (  0.00%)            0      706 (  0.00%)
	   Species:       53        0 (  0.00%)            0       53 (  0.00%)
Insert Time = 13, 265015 per hour
Process Completed: 16 sec
incorrect result
make[1]: *** [debian/rules:27: override_dh_auto_test] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:15: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2