[Debian-med-packaging] Bug#1036743: kleborate: debsums reports modified files after apt-get upgrade && apt-get dist-upgrade

Andreas Beckmann anbe at debian.org
Thu May 25 08:01:52 BST 2023


Package: kleborate
Version: 2.3.1-1
Severity: serious
User: debian-qa at lists.debian.org
Usertags: piuparts

Hi,

during a test with piuparts I noticed debsums reporting modified files
after a 2-stage upgrade from bullseye to bookworm:
  apt-get upgrade
  apt-get dist-upgrade
(It does not happen if only a single-stage apt-get dist-upgrade is used)

kleborate gets upgraded during the first stage, 'apt-get upgrade'.

>From the attached log (scroll to the bottom...):

2m4.4s ERROR: FAIL: debsums reports modifications inside the chroot:
  /usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta.ndb
  /usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta.ntf
  /usr/lib/python3/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta.ndb
  /usr/lib/python3/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta.ntf
  /usr/lib/python3/dist-packages/kleborate/data/MgrB_and_PmrB.fasta.ndb
  /usr/lib/python3/dist-packages/kleborate/data/MgrB_and_PmrB.fasta.ntf
  /usr/lib/python3/dist-packages/kleborate/data/OmpK.fasta.ndb
  /usr/lib/python3/dist-packages/kleborate/data/OmpK.fasta.ntf
  /usr/lib/python3/dist-packages/kleborate/data/QRDR_120.fasta.ndb
  /usr/lib/python3/dist-packages/kleborate/data/QRDR_120.fasta.ntf
  /usr/lib/python3/dist-packages/kleborate/data/clb_alleles.fasta.ndb
  /usr/lib/python3/dist-packages/kleborate/data/clb_alleles.fasta.ntf
  /usr/lib/python3/dist-packages/kleborate/data/iro_alleles.fasta.ndb
  /usr/lib/python3/dist-packages/kleborate/data/iro_alleles.fasta.ntf
  /usr/lib/python3/dist-packages/kleborate/data/iuc_alleles.fasta.ndb
  /usr/lib/python3/dist-packages/kleborate/data/iuc_alleles.fasta.ntf
  /usr/lib/python3/dist-packages/kleborate/data/rmpA2.fasta.ndb
  /usr/lib/python3/dist-packages/kleborate/data/rmpA2.fasta.ntf
  /usr/lib/python3/dist-packages/kleborate/data/rmp_alleles.fasta.ndb
  /usr/lib/python3/dist-packages/kleborate/data/rmp_alleles.fasta.ntf
  /usr/lib/python3/dist-packages/kleborate/data/wzi.fasta.ndb
  /usr/lib/python3/dist-packages/kleborate/data/wzi.fasta.ntf
  /usr/lib/python3/dist-packages/kleborate/data/ybt_alleles.fasta.ndb
  /usr/lib/python3/dist-packages/kleborate/data/ybt_alleles.fasta.ntf


cheers,

Andreas
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