[Debian-med-packaging] Bug#1055593: ITP: bifrost -- parallel construction, indexing and querying of de Bruijn graphs

[Andreas Tille]

Package: wnpp
Severity: wishlist

Subject: ITP: bifrost -- parallel construction, indexing and querying of de Bruijn graphs
Package: wnpp
Owner: Andreas Tille <tille at debian.org>
Severity: wishlist

* Package name    : bifrost
  Version         : 1.3.0
  Upstream Author : Pall Melsted, Guillaume Holley
* URL             : https://github.com/pmelsted/bifrost
* License         : BSD-2-clause
  Programming Lang: C
  Description     : parallel construction, indexing and querying of de Bruijn graphs
 Bifrost is a command-line tool for sequencing that features a broad
 range of functions, such as indexing, editing, and querying the graph,
 and includes a graph coloring method that maps each k-mer of the graph
 to the genomes it occurs in.
 .
  * Build, index, color and query the compacted de Bruijn graph
  * No need to build the uncompacted de Bruijn graph
  * Reads or assembled genomes as input
  * Output graph in GFA (can be visualized with Bandage), FASTA or binary
  * Graph cleaning: short tip clipping, etc.
  * Multi-threaded
  * No parameters to estimate with other tools
  * Exact or approximate k-mer search of queries

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/bifrost