[Debian-med-packaging] Bug#1055414: patch for bedtools FTBFS on i386 with "intersect" tool failure

Étienne Mollier emollier at debian.org
Wed Nov 15 12:43:55 GMT 2023


Control: tags -1 + patch

The below patch fixes the test failure.  There is a catch though
in that I think it introduces a baseline violation on i386, but
similar change was already needed in htslib to fix #942580.  I'm
not sure what to make of that for now.

----------------------------------------------------------------
--- a/debian/rules
+++ b/debian/rules
@@ -6,7 +6,7 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all
 
 include /usr/share/dpkg/default.mk
 ifneq (,$(filter $(DEB_HOST_ARCH),i386 kfreebsd-i386 hurd-i386))
-  export DEB_CXXFLAGS_MAINT_APPEND=-ffloat-store
+  export DEB_CXXFLAGS_MAINT_APPEND=-msse -mfpmath=sse
 endif
 
 %:
----------------------------------------------------------------
-- 
  .''`.  Étienne Mollier <emollier at debian.org>
 : :' :  gpg: 8f91 b227 c7d6 f2b1 948c  8236 793c f67e 8f0d 11da
 `. `'   sent from /dev/pts/5, please excuse my verbosity
   `-
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