[Debian-med-packaging] Bug#1056330: bookworm-pu: package toil/5.9.2-2+deb12u1

[Santiago Vila]

Package: release.debian.org
Severity: normal
Tags: bookworm
User: release.debian.org at packages.debian.org
Usertags: pu
X-Debbugs-Cc: toil at packages.debian.org, sanvila at debian.org
Control: affects -1 + src:toil

[ Reason ]
This upload fixes Bug#1031192. FTBFS on single-cpu systems.

[ Impact ]
Anybody trying to build the package from source in stable on a single-cpu
system will see that the package unexpectedly FTBFS.

[ Tests ]
I've tested that the updated package builds ok in all systems.

[ Risks ]
There are no actual code changes in the program, only in the
way the tests are executed.

[ Checklist ]
   [X] *all* changes are documented in the d/changelog
   [X] I reviewed all changes and I approve them
   [X] attach debdiff against the package in (old)stable
   [X] the issue is verified as fixed in unstable

[ Changes ]
Backport patch from unstable to run the tests using
a single CPU.

[ Other info ]
The package is already uploaded.
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diff -Nru toil-5.9.2/debian/changelog toil-5.9.2/debian/changelog
--- toil-5.9.2/debian/changelog	2023-02-06 19:04:14.000000000 +0100
+++ toil-5.9.2/debian/changelog	2023-11-21 00:35:00.000000000 +0100
@@ -1,3 +1,11 @@
+toil (5.9.2-2+deb12u1) bookworm; urgency=medium
+
+  * Team upload.
+  * Apply patch by Michael R. Crusoe to request a single core
+    in the tests. Closes: #1031192.
+
+ -- Santiago Vila <sanvila at debian.org>  Tue, 21 Nov 2023 00:35:00 +0100
+
 toil (5.9.2-2) unstable; urgency=medium
 
   * Add patch to handle errors when testing on ec2.
diff -Nru toil-5.9.2/debian/patches/fewer_cores toil-5.9.2/debian/patches/fewer_cores
--- toil-5.9.2/debian/patches/fewer_cores	1970-01-01 01:00:00.000000000 +0100
+++ toil-5.9.2/debian/patches/fewer_cores	2023-11-21 00:34:08.000000000 +0100
@@ -0,0 +1,37 @@
+From: Michael R. Crusoe <crusoe at debian.org>
+Subject: Tests: only request a single core
+Bugs: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1031192
+
+--- a/src/toil/test/src/helloWorldTest.py
++++ b/src/toil/test/src/helloWorldTest.py
+@@ -24,7 +24,7 @@
+ 
+ class HelloWorld(Job):
+     def __init__(self):
+-        Job.__init__(self,  memory=100000, cores=2, disk="3G")
++        Job.__init__(self,  memory=100000, cores=1, disk="3G")
+ 
+     def run(self, fileStore):
+         fileID = self.addChildJobFn(childFn, cores=1, memory="1M", disk="3G").rv()
+--- a/src/toil/test/src/realtimeLoggerTest.py
++++ b/src/toil/test/src/realtimeLoggerTest.py
+@@ -57,7 +57,7 @@
+ 
+ class LogTest(Job):
+     def __init__(self):
+-        Job.__init__(self, memory=100000, cores=2, disk='3G')
++        Job.__init__(self, memory=100000, cores=1, disk='3G')
+ 
+     def run(self, fileStore):
+         RealtimeLogger.info('This should be logged at info level')
+--- a/src/toil/test/src/userDefinedJobArgTypeTest.py
++++ b/src/toil/test/src/userDefinedJobArgTypeTest.py
+@@ -59,7 +59,7 @@
+ 
+ class JobClass(Job):
+     def __init__(self, level, foo):
+-        Job.__init__(self, memory=100000, cores=2, disk="300M")
++        Job.__init__(self, memory=100000, cores=1, disk="300M")
+         self.level = level
+         self.foo = foo
+ 
diff -Nru toil-5.9.2/debian/patches/series toil-5.9.2/debian/patches/series
--- toil-5.9.2/debian/patches/series	2023-02-06 19:01:55.000000000 +0100
+++ toil-5.9.2/debian/patches/series	2023-11-21 00:34:08.000000000 +0100
@@ -10,3 +10,4 @@
 atomic_copy_as_alternative.patch
 python3_in_doc.patch
 avoid_boto
+fewer_cores