[Debian-med-packaging] Bug#1056455: python-anndata's autopkg tests fail with Python 3.12

[Matthias Klose]

Package: src:python-anndata
Version: 0.8.0-4
Severity: important
Tags: sid trixie
User: debian-python at lists.debian.org
Usertags: python3.12

python-anndata's autopkg tests fail with Python 3.12:

[...]
433s Testing with python3.12:
435s ============================= test session starts 
==============================
435s platform linux -- Python 3.12.0+, pytest-7.4.3, pluggy-1.3.0
435s rootdir: /tmp/autopkgtest.cRh5KZ/autopkgtest_tmp
435s plugins: cov-4.1.0
435s collected 909 items / 5 errors / 1 skipped
435s
435s ==================================== ERRORS 
====================================
435s _________________ ERROR collecting tests/test_anncollection.py 
_________________
435s ImportError while importing test module 
'/usr/lib/python3/dist-packages/anndata/tests/test_anncollection.py'.
435s Hint: make sure your test modules/packages have valid Python names.
435s Traceback:
435s /usr/lib/python3.12/importlib/__init__.py:90: in import_module
435s     return _bootstrap._gcd_import(name[level:], package, level)
435s 
/usr/lib/python3/dist-packages/anndata/tests/test_anncollection.py:7: in 
<module>
435s     from sklearn.preprocessing import LabelEncoder
435s /usr/lib/python3/dist-packages/sklearn/__init__.py:82: in <module>
435s     from .base import clone
435s /usr/lib/python3/dist-packages/sklearn/base.py:17: in <module>
435s     from .utils import _IS_32BIT
435s /usr/lib/python3/dist-packages/sklearn/utils/__init__.py:21: in 
<module>
435s     from . import _joblib
435s /usr/lib/python3/dist-packages/sklearn/utils/_joblib.py:7: in <module>
435s     import joblib
435s /usr/lib/python3/dist-packages/joblib/__init__.py:113: in <module>
435s     from .memory import Memory, MemorizedResult, register_store_backend
435s /usr/lib/python3/dist-packages/joblib/memory.py:32: in <module>
435s     from ._store_backends import StoreBackendBase, 
FileSystemStoreBackend
435s /usr/lib/python3/dist-packages/joblib/_store_backends.py:15: in 
<module>
435s     from .backports import concurrency_safe_rename
435s /usr/lib/python3/dist-packages/joblib/backports.py:22: in <module>
435s     import distutils  # noqa
435s E   ModuleNotFoundError: No module named 'distutils'
435s _________________ ERROR collecting tests/test_hdf5_backing.py 
__________________
435s ImportError while importing test module 
'/usr/lib/python3/dist-packages/anndata/tests/test_hdf5_backing.py'.
435s Hint: make sure your test modules/packages have valid Python names.
435s Traceback:
435s /usr/lib/python3.12/importlib/__init__.py:90: in import_module
435s     return _bootstrap._gcd_import(name[level:], package, level)
435s 
/usr/lib/python3/dist-packages/anndata/tests/test_hdf5_backing.py:4: in 
<module>
435s     import joblib
435s /usr/lib/python3/dist-packages/joblib/__init__.py:113: in <module>
435s     from .memory import Memory, MemorizedResult, register_store_backend
435s /usr/lib/python3/dist-packages/joblib/memory.py:32: in <module>
435s     from ._store_backends import StoreBackendBase, 
FileSystemStoreBackend
435s /usr/lib/python3/dist-packages/joblib/_store_backends.py:15: in 
<module>
435s     from .backports import concurrency_safe_rename
435s /usr/lib/python3/dist-packages/joblib/backports.py:22: in <module>
435s     import distutils  # noqa
435s E   ModuleNotFoundError: No module named 'distutils'
435s ___________________ ERROR collecting tests/test_obsmvarm.py 
____________________
435s ImportError while importing test module 
'/usr/lib/python3/dist-packages/anndata/tests/test_obsmvarm.py'.
435s Hint: make sure your test modules/packages have valid Python names.
435s Traceback:
435s /usr/lib/python3.12/importlib/__init__.py:90: in import_module
435s     return _bootstrap._gcd_import(name[level:], package, level)
435s /usr/lib/python3/dist-packages/anndata/tests/test_obsmvarm.py:1: in 
<module>
435s     import joblib
435s /usr/lib/python3/dist-packages/joblib/__init__.py:113: in <module>
435s     from .memory import Memory, MemorizedResult, register_store_backend
435s /usr/lib/python3/dist-packages/joblib/memory.py:32: in <module>
435s     from ._store_backends import StoreBackendBase, 
FileSystemStoreBackend
435s /usr/lib/python3/dist-packages/joblib/_store_backends.py:15: in 
<module>
435s     from .backports import concurrency_safe_rename
435s /usr/lib/python3/dist-packages/joblib/backports.py:22: in <module>
435s     import distutils  # noqa
435s E   ModuleNotFoundError: No module named 'distutils'
435s ___________________ ERROR collecting tests/test_obspvarp.py 
____________________
435s ImportError while importing test module 
'/usr/lib/python3/dist-packages/anndata/tests/test_obspvarp.py'.
435s Hint: make sure your test modules/packages have valid Python names.
435s Traceback:
435s /usr/lib/python3.12/importlib/__init__.py:90: in import_module
435s     return _bootstrap._gcd_import(name[level:], package, level)
435s /usr/lib/python3/dist-packages/anndata/tests/test_obspvarp.py:2: in 
<module>
435s     import joblib
435s /usr/lib/python3/dist-packages/joblib/__init__.py:113: in <module>
435s     from .memory import Memory, MemorizedResult, register_store_backend
435s /usr/lib/python3/dist-packages/joblib/memory.py:32: in <module>
435s     from ._store_backends import StoreBackendBase, 
FileSystemStoreBackend
435s /usr/lib/python3/dist-packages/joblib/_store_backends.py:15: in 
<module>
435s     from .backports import concurrency_safe_rename
435s /usr/lib/python3/dist-packages/joblib/backports.py:22: in <module>
435s     import distutils  # noqa
435s E   ModuleNotFoundError: No module named 'distutils'
435s _____________________ ERROR collecting tests/test_views.py 
_____________________
435s ImportError while importing test module 
'/usr/lib/python3/dist-packages/anndata/tests/test_views.py'.
435s Hint: make sure your test modules/packages have valid Python names.
435s Traceback:
435s /usr/lib/python3.12/importlib/__init__.py:90: in import_module
435s     return _bootstrap._gcd_import(name[level:], package, level)
435s /usr/lib/python3/dist-packages/anndata/tests/test_views.py:4: in 
<module>
435s     import joblib
435s /usr/lib/python3/dist-packages/joblib/__init__.py:113: in <module>
435s     from .memory import Memory, MemorizedResult, register_store_backend
435s /usr/lib/python3/dist-packages/joblib/memory.py:32: in <module>
435s     from ._store_backends import StoreBackendBase, 
FileSystemStoreBackend
435s /usr/lib/python3/dist-packages/joblib/_store_backends.py:15: in 
<module>
435s     from .backports import concurrency_safe_rename
435s /usr/lib/python3/dist-packages/joblib/backports.py:22: in <module>
435s     import distutils  # noqa
435s E   ModuleNotFoundError: No module named 'distutils'